Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq160 260 2e-64 seq318 149 9e-31 seq805 134 2e-26 seq792 105 1e-17 >seq160 Length=904994 Score = 260 bits (288), Expect = 2e-64 Identities = 545/799 (68%), Gaps = 23/799 (3%) Strand=Plus/Plus Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGT 18043 || ||||| || ||| | || | |||| |||| || |||||||| || | || Sbjct 788647 AACCTATCAGCAACATACTCAATATATGTACACATTGCATTACAATTCATTCCGATTAAA 788706 Query 18044 CTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATG 18103 |||| ||| ||||| ||| | | |||||||| || || | ||||| || || || Sbjct 788707 CTGACAGGCAGAGCTTCAGTTAGAAATTCTTGTTCGATTTTAACAGCATCACAAATGATA 788766 Query 18104 TTTATTACCCTAGATTTTGGCAA---TTTATTAATTATGTGATTATAATATAATAAACAC 18160 || | | || || | || | ||| | || || ||| | || | || || Sbjct 788767 TTCGTGA---TACGTTCTTGCGACGGTTTCTGAACTAAATGAG-AGAAAAGAAGG--CAG 788820 Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 ||||| ||| || ||||||||||| ||||| || ||||| || || ||||| || Sbjct 788821 GCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAGAAAGTTAAACCT 788880 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 ||||| | ||| | || || | ||| ||||| | ||| ||||||| ||| || ||||| Sbjct 788881 GGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTACCAGAGAAAAATATC 788940 Query 18281 CCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGTAT 18339 || ||||| ||| ||||| |||| | || |||||| ||| || | | ||| ||| Sbjct 788941 CCTTCAACTGCA-GCGAAAGCTACAATTCGTTCAGCGAAAGTGGAGCTTTTGGAGCTTAT 788999 Query 18340 CCATTTTTGTGCCCA-TTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 ||| || | ||||| ||| |||| | ||| || || | || || || || | Sbjct 789000 CCAATTGAGGGCCCAATTCGCCTTTTTCGCT-ACACAAGGCATCGTTTCGATGGCGTTGA 789058 Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458 |||||| ||||||||| | | || | |||||| || || || | | | |||||||| Sbjct 789059 ACAAATATTCTTTTTCTGTAGGGTCCTGTATATAGGTTTCTATCAGAATACTATACATTT 789118 Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATAT- 18517 |||| || ||| | ||||||||||| ||||||| ||||| | | ||| || || ||| Sbjct 789119 CAGAGTGAATGTTCTCCATAGCTATTTGAAAACCGTAAAAGCAGCGAGCTTCTGG-TATC 789177 Query 18518 TGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCG 18577 |||| ||| | ||||| || || || || ||||| || ||||| |||| || ||| Sbjct 789178 TGAACCTCCTGACTGAATCTCTCGACTAAGTTTTCATTGACAATACCATCAGAAGCAGCG 789237 Query 18578 AAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTT---GAGATTGTTCCAT 18634 ||||| || ||||||| |||||||||| |||| ||||| |||||| |||||| Sbjct 789238 AAAAAGGCTAAAACATGCGAAATGAAATGTCTTTC---GTCCTTAGAGAGATTCTTCCAT 789294 Query 18635 T-CATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTG 18693 | | || | ||| || || |||||||| || | |||||| || || | ||| || | Sbjct 789295 TGCTTCGA-GTCTCGAGACAGGTCAACTTCCTCAGTTGTCCAGAAGGAAGCTTCTGCTTC 789353 Query 18694 TTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAATAATATATATCGTTTATAATT 18753 ||| ||| || | | ||||||| | || |||||||||| || | | ||| | ||| Sbjct 789354 TTTATACTTTGTCCATATATCTTTGTACTGAATAGGAAATACTACAAACCGTCCAGGATT 789413 Query 18754 TTTTATTAACATAGGTTCT 18772 || | ||| | |||||| Sbjct 789414 TTCTCTTAGGAGGGGTTCT 789432 >seq318 Length=663677 Score = 149 bits (164), Expect = 9e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | ||||| || |||||||| || || || |||||||| ||| || Sbjct 605915 AATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACGTTAGAAGTTGAACCATC 605974 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || ||||||||| |||||| ||||| ||||| ||||| || ||||| || Sbjct 605975 TGACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCA 606034 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||||||| | ||| || || || || |||||| | |||| |||||||||||||| Sbjct 606035 ACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTATCAGATTATAA 606094 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || ||||| || || Sbjct 606095 CATTCAGAAAGAATCTACACTTCACTTGGT 606124 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | |||||||| || ||||| || ||||| ||| || Sbjct 606144 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACAATTACCTTGGAAGTTGAACCATCC 606203 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||||||| |||||| ||||| ||||| ||||| || ||||| ||| Sbjct 606204 GACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCAA 606263 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || || || || || |||||| | |||| || ||||||||||| Sbjct 606264 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGATTATAAC 606323 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | ||||||||||| || Sbjct 606324 ATTCAGAAAGAATCTACGCTTCATTTGGT 606352 Score = 114 bits (126), Expect = 2e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | ||||| ||||||| |||||||| || | || || ||| || Sbjct 605459 AATGCAGATCTTTGTGAAAACGCTGACTGGTAAAACTATCACCCTTGAGGTTGAACCATC 605518 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || || || ||| || || |||||||| ||||| || || ||||| || Sbjct 605519 TGACACCATCGAGAATGTTAAAGCCAAGATCCAAGATAAGGAAGGAATTCCCCCAGACCA 605578 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||||||| | ||| || || || || |||||| | |||| || ||||||||||| Sbjct 605579 ACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGATTATAA 605638 Query 156002 TAT 156004 || Sbjct 605639 CAT 605641 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | |||||||| || ||||| || ||||| ||| || Sbjct 605688 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACCATTACCTTGGAAGTGGAACCATCC 605747 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||||| || || || ||||| || || ||||| ||| Sbjct 605748 GACACCATCGAGAATGTAAAAGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCAA 605807 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || || || || || |||||| |||||| || || |||||||| Sbjct 605808 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCAGAACCTTGTCTGATTATAAC 605867 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||||| | || ||||| || || Sbjct 605868 ATTCAGAAAGAATCTACACTTCACTTGGT 605896 >seq805 Length=567825 Score = 134 bits (148), Expect = 2e-26 Identities = 139/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| | |||||||| || || || |||||||| ||| ||| Sbjct 473590 ATGCAAATATTTGTCAAAACTTCAACTGGAAAGACCATAACGTTAGAAGTTGAACCATCT 473649 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||||||| |||||| ||||| ||||| ||||| || ||||| ||| Sbjct 473650 GACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCGCCAGACCAA 473709 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || || || || || |||||| | |||| || |||| |||||| Sbjct 473710 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGCTTATAAC 473769 Query 156003 AT 156004 || Sbjct 473770 AT 473771 >seq792 Length=424820 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||||||| | || || || || || || | || |||||| ||| Sbjct 96926 ATGCAAATTTTCGTTAAAACACTCACGGGTAAGACCATCACCCTCGAGGTCGAACCCTCT 96985 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||| || ||| || ||||| || ||||| || || ||||| || Sbjct 96986 GACACCATCGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGGATCCCCCCAGATCAG 97045 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | || || || |||||||||||| ||||| | || || || ||| Sbjct 97046 CAAAGATTGATCTTCGCTGGAAAACAGCTCGAAGATGGTCGAACTCTTTCCGACTACAAT 97105 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | || || ||| | || | ||||| || || ||| Sbjct 97106 ATTCAGAAGGAGTCCACCCTCCATCTCGTCCTCAGATTGAGGGGAGGT 97153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731648843078800