Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq318 150 4e-31 seq253 147 4e-30 seq160 145 2e-29 seq199 122 2e-22 >seq318 Length=663677 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || || || | |||| ||||| || |||||||| Sbjct 606145 ATACCACCACGGAGACGAAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCT 606086 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 ||||| ||||| |||| |||| |||||| ||||||||||| ||||| ||||| || || Sbjct 606085 GATAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGG 606026 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| |||||| ||| || || || | || || | ||| Sbjct 606025 GGAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCA 605966 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||||| || ||||| || |||||||| ||||| | ||| ||||||||| Sbjct 605965 ACTTCTAACGTTATGGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCATT 605915 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || || || | || | ||||| || |||||||| Sbjct 605689 ATACCACCACGGAGACGAAGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCT 605630 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || ||||| |||| |||| |||||| ||||||||||| ||||| ||||| || || Sbjct 605629 GACAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGG 605570 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || || ||| ||||| || | || || | ||| Sbjct 605569 GGAATTCCTTCCTTATCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCA 605510 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || || ||||||||||| | ||||| | ||| ||||||||| Sbjct 605509 ACCTCAAGGGTGATAGTTTTACCAGTCAGCGTTTTCACAAAGATCTGCATT 605459 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || || || | |||| ||||| || ||||||||| Sbjct 605917 ATTCCACCACGGAGACGGAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCA 605858 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| |||| |||| |||||| ||||| ||||| ||||| ||||| || || Sbjct 605857 GACAAGGTTCTGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGG 605798 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || || || ||||| ||||||||| || | || || | ||| Sbjct 605797 GGAATTCCTTCCTTGTCCTGAATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCC 605738 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | |||||||| || ||||||| ||||| | ||| |||||||| Sbjct 605737 ACTTCCAAGGTAATGGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 605688 >seq253 Length=804807 Score = 147 bits (162), Expect = 4e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| || || | || ||||| | || | ||||| || || ||||| || || || Sbjct 281367 ACCTCCCCTCAATCGCAATACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGA 281426 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| |||||||||||||||||||| ||||| | ||||||||| ||||| Sbjct 281427 CAAAGTACGTCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGG 281486 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||| || || | ||| || ||| || ||||| || | ||| || | ||| || Sbjct 281487 AATTCCCTCCTTGTTTTGAATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGAC 281546 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| |||||||| || ||||||| ||| |||||||| || Sbjct 281547 CTCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCATCTT 281597 >seq160 Length=904994 Score = 145 bits (160), Expect = 2e-29 Identities = 391/601 (65%), Gaps = 6/601 (1%) Strand=Plus/Plus Query 49824 CATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 49883 || ||||| ||| ||| ||||| || ||||| || || |||||||| |||||||| Sbjct 788818 CAGGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAGAAAGTTAAA 788877 Query 49884 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 49943 |||||||| || || | ||| || | ||| ||||| | ||||||||||| ||| || ||| Sbjct 788878 CCTGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTACCAGAGAAAAAT 788937 Query 49944 ATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA--TTTATCATCTA 50001 || || || || || || |||| |||| | | | || | | ||| | || Sbjct 788938 ATCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGTGGAGCTTTTGGAGCT- 788996 Query 50002 ATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 50061 ||||||||| | ||||||| || ||||| | | |||| || |||| || || | Sbjct 788997 -TATCCAATTGAGGGCCCAATTCGCCTTTTTCGCTACACAAGGCATCGTTTCGATGGCGT 789055 Query 50062 TAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACA 50121 | || || | | |||||| || | | | ||||| Sbjct 789056 TGAACAAATATTCTTTTTCTGTAGGGTCCTGTATATAGGTTTCTATCAGAATACTATACA 789115 Query 50122 TTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAAT 50181 ||||||| || | ||||||||||||||||| ||||| | ||||||| Sbjct 789116 TTTCAGAGTGAATGTTCTCCATAGCTATTTGAAAACCGTAAAAGCAGCGAGCTTCTGGTA 789175 Query 50182 ACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 50241 |||||| || | ||||| || ||||| || ||| |||||||||||||| || | Sbjct 789176 TCTGAACCTCCTGACTGAATCTCTCGACTAAGTTTTCATTGACAATACCATCAGAAGCAG 789235 Query 50242 CGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATT-TTCCCAA 50300 |||| || |||||||| | ||| |||||| |||| | | | ||| |||| Sbjct 789236 CGAAAAAGGCTAAAACATGCGAAATGAAATGTCTTTCGTCCTTAGAGAGATTCTTCCATT 789295 Query 50301 GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTT 50360 | ||| || || || | || ||||| || ||||||| || || ||| | | || | Sbjct 789296 GCTTCGAG-TCTCGAGACAGGTCAACTTCCTCAGTTGTCCAGAAGGAAGCTTCTGCTTCT 789354 Query 50361 TTATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCGTTTAGTATTT 50420 |||||| || ||||||| | | ||| ||||||| |||| | ||| || |||| Sbjct 789355 TTATACTTTGTCCATATATCTTTGTACTGAATAGGAAATACTACAAACCGTCCAGGATTT 789414 Query 50421 T 50421 | Sbjct 789415 T 789415 >seq199 Length=980398 Score = 122 bits (134), Expect = 2e-22 Identities = 142/193 (74%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAG--------CAAAGA 192406 ||||| || || || || || ||| |||| |||||||||||||||| |||| | Sbjct 850365 ATATTGTAGTCCGACAAAGTACGTCCATCTTCCAATTGTTTACCAGCAAAAATGCAAAAA 850306 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 |||| | |||||| || ||||| ||||| || || ||||| || ||| || ||||| Sbjct 850305 TTAAACACTGTTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTAACATTTT 850246 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || ||| || ||| | || || ||||| ||||| |||||||| || ||||||| || Sbjct 850245 CGATGATATCCGAAGATCCGACCTCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAA 850186 Query 192527 ATATCTGCATTTT 192539 | |||||||| || Sbjct 850185 AGATCTGCATCTT 850173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984172315235550