Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq253 149 1e-30 seq318 147 4e-30 seq199 125 1e-23 seq160 116 7e-21 seq12025 95.1 2e-14 >seq253 Length=804807 Score = 149 bits (164), Expect = 1e-30 Identities = 183/249 (73%), Gaps = 1/249 (0%) Strand=Plus/Plus Query 171825 CTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTT 171883 ||| ||| ||||| | ||| || || | ||| ||||| | || | ||||| || || Sbjct 281349 CTTCTTACGTTTCTTTGCACCTCCCCTCAATCGCAATACAAGGTGAAGAGTAGATTCCTT 281408 Query 171884 AGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAA 171943 ||||| || || || |||| ||| | || |||||||||||||||||||||||||| Sbjct 281409 TTGTATATTGTAGTCCGACAAAGTACGTCCATCTTCCAATTGTTTACCAGCAAAAATTAA 281468 Query 171944 TCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 172003 | |||||| || ||||| ||||| || || | ||| || ||| || ||||| || Sbjct 281469 ACGCTGTTGATCTGGTGGAATTCCCTCCTTGTTTTGAATCTTAGCCTTAACATTTTCGAT 281528 Query 172004 AGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATAT 172063 ||||| || | ||| || || ||||| ||||| |||||||| || ||||||| || || Sbjct 281529 GGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGAT 281588 Query 172064 CTGCATTTT 172072 |||||| || Sbjct 281589 CTGCATCTT 281597 >seq318 Length=663677 Score = 147 bits (162), Expect = 4e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || || | |||| ||||| ||| ||||||||| Sbjct 606145 ATACCACCACGGAGACGAAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCT 606086 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | ||| | || |||| |||||| |||||||| || ||||| |||||||| || Sbjct 606085 GATAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGG 606026 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| |||||| ||| || || || || || || | ||| Sbjct 606025 GGAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCA 605966 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||||| || ||||| || |||||||| ||||| | || ||||||||| Sbjct 605965 ACTTCTAACGTTATGGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCATT 605915 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || || || | || | ||||| ||| ||||||||| Sbjct 605689 ATACCACCACGGAGACGAAGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCT 605630 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| | || |||| |||||| |||||||| || ||||| |||||||| || Sbjct 605629 GACAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGG 605570 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || || ||| ||||| || || || || | ||| Sbjct 605569 GGAATTCCTTCCTTATCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCA 605510 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || || ||||||||||| | ||||| | || ||||||||| Sbjct 605509 ACCTCAAGGGTGATAGTTTTACCAGTCAGCGTTTTCACAAAGATCTGCATT 605459 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| || || | || ||||| | |||| ||||| ||| ||||||||||| Sbjct 606370 CCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCTGAC 606311 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | ||| | || |||| |||||| ||||| || || ||||| |||||||| || || Sbjct 606310 AAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGA 606251 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || || ||||| ||||| |||||| ||| || || || || || || | ||| ||| Sbjct 606250 ATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCGGATGGTTCAACT 606191 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| || || ||||||| ||||| | || |||||||| Sbjct 606190 TCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 606144 >seq199 Length=980398 Score = 125 bits (138), Expect = 1e-23 Identities = 143/193 (74%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAA-------- 171939 ||||| || || || |||| ||| | || |||||||||||||||||||||| Sbjct 850365 ATATTGTAGTCCGACAAAGTACGTCCATCTTCCAATTGTTTACCAGCAAAAATGCAAAAA 850306 Query 171940 TTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 171999 |||| | ||||||||| ||||| ||||| || || ||||| || ||| || ||||| Sbjct 850305 TTAAACACTGTTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTTAGCCTTAACATTTT 850246 Query 172000 TTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGA 172059 || |||| || ||| | || || ||||| ||||| |||||||| || ||||||| | Sbjct 850245 CGATGATATCCGAAGATCCGACCTCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAA 850186 Query 172060 ATATCTGCATTTT 172072 | |||||||| || Sbjct 850185 AGATCTGCATCTT 850173 >seq160 Length=904994 Score = 116 bits (128), Expect = 7e-21 Identities = 381/601 (63%), Gaps = 6/601 (1%) Strand=Plus/Plus Query 39126 CATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAAT 39185 || ||||| || ||| |||||||| ||||| || || |||||||| |||||||| Sbjct 788818 CAGGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAGAAAGTTAAA 788877 Query 39186 CCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAAT 39245 |||||||| || || | ||| || | ||| ||||| | ||||||||||| ||| || ||| Sbjct 788878 CCTGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTACCAGAGAAAAAT 788937 Query 39246 ATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA--TTTATCATCTA 39303 || || || || || || |||| |||| | | | || | | ||| | || Sbjct 788938 ATCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGTGGAGCTTTTGGAGCT- 788996 Query 39304 AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 39363 |||||||| | |||||||| || ||||| | | |||| || |||| || || | Sbjct 788997 -TATCCAATTGAGGGCCCAATTCGCCTTTTTCGCTACACAAGGCATCGTTTCGATGGCGT 789055 Query 39364 TAAATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACA 39423 | || || | | | ||||| Sbjct 789056 TGAACAAATATTCTTTTTCTGTAGGGTCCTGTATATAGGTTTCTATCAGAATACTATACA 789115 Query 39424 TTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAAT 39483 ||||||| || | ||||||||||||||||| ||||| | ||||||| Sbjct 789116 TTTCAGAGTGAATGTTCTCCATAGCTATTTGAAAACCGTAAAAGCAGCGAGCTTCTGGTA 789175 Query 39484 ACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTG 39543 |||||| || | ||||| || ||||| || ||| |||||||||||||| || | Sbjct 789176 TCTGAACCTCCTGACTGAATCTCTCGACTAAGTTTTCATTGACAATACCATCAGAAGCAG 789235 Query 39544 CGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATT-TTCCCAA 39602 |||| || |||||||||| ||| |||||| |||| | | | ||| |||| Sbjct 789236 CGAAAAAGGCTAAAACATGCGAAATGAAATGTCTTTCGTCCTTAGAGAGATTCTTCCATT 789295 Query 39603 GATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTT 39662 | ||| || || || | || ||||| || ||||||| || || ||| | | || | Sbjct 789296 GCTTCGAG-TCTCGAGACAGGTCAACTTCCTCAGTTGTCCAGAAGGAAGCTTCTGCTTCT 789354 Query 39663 TTATACATTTGATATATATCAAAATGTTCAATGGGAAATAACACATATCGTTTAGTATTT 39722 |||||| || ||||||| | | ||| ||||||| ||| | ||| || |||| Sbjct 789355 TTATACTTTGTCCATATATCTTTGTACTGAATAGGAAATACTACAAACCGTCCAGGATTT 789414 Query 39723 T 39723 | Sbjct 789415 T 789415 >seq12025 Length=7061 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 171933 GCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTT 171992 ||||||||||| | |||||| || ||||| |||| || || ||||| || ||| || Sbjct 4363 GCAAAAATTAAACGCTGTTGATCTGGTGGAATTCTCTCCTTGTCTTGAATCTTAGCCTTA 4304 Query 171993 ACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 ||||| || ||||| || ||| || || ||||| ||||| |||||||| || ||| Sbjct 4303 ACATTTTCGATGGTATCCGAAAGTTCGACCTCAAGAGTGATGGTCTTACCAGTCAAAGTT 4244 Query 172053 TTAATGAATATCTGCATTTT 172072 |||| || |||||||| || Sbjct 4243 TTAACAAAGATCTGCATCTT 4224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904860012719400