Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq90 187 2e-42 seq318 125 6e-24 seq805 89.7 4e-13 >seq90 Length=3439812 Score = 187 bits (206), Expect = 2e-42 Identities = 195/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 34349 ACACAAACTTGCGGATGAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGC 34408 |||| ||||||| ||||| || || || || ||||| | ||| | |||||| || | Sbjct 1384402 ACACTTACTTGCGAATGAACCCGTCGAGAAGATCCTGCAGCTTGGAAGCGTCGTGTGAAC 1384343 Query 34409 CGTTGACGATGAATCGTTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACC 34468 | || |||||||| || || |||||| |||||| || || || || || |||||||| | Sbjct 1384342 CATTAACGATGAACCGCTCATTTTTGAAATCGAATTGGGTCTGAGCCCCTAGCTCGCAGC 1384283 Query 34469 CGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGT 34528 | ||||| || || ||||| | | || | ||||| | ||| |||| || ||||| Sbjct 1384282 CAAAGTATTTGGTAGGGTAGGTAGGTGGCCTGCCAAGGGACTTAGCGACCTCTACCATGT 1384223 Query 34529 TGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCA 34588 ||||||||||||||||||| ||||| ||||| ||||| |||||||| ||| || |||| Sbjct 1384222 TGACGATGACAGTCTTGATACCGTTTCCCTTACCTTCCACCTTGGCCATGATCCGTGGCA 1384163 Query 34589 TTTTGTAGCGGTAGAA 34604 | |||||||||||||| Sbjct 1384162 TCTTGTAGCGGTAGAA 1384147 >seq318 Length=663677 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||||||| |||| || || ||||||||| | ||| ||| || | Sbjct 605688 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACCATTACCTTGGAAGTGGAACCATCC 605747 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | |||||| || ||| ||||| ||||| | ||| || ||| Sbjct 605748 GACACCATCGAGAATGTAAAAGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCAA 605807 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | || || ||||| ||||| |||| |||||| || | ||||| ||| Sbjct 605808 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCAGAACCTTGTCTGATTATAAC 605867 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| ||||||||||| | ||| |||| Sbjct 605868 ATTCAGAAAGAATCTACACTTCACTTGGT 605896 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||||||| |||| || || || |||||| | ||| || || | Sbjct 606144 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACAATTACCTTGGAAGTTGAACCATCC 606203 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| || || |||||||| ||| | ||| || ||| Sbjct 606204 GACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCAA 606263 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | || || ||||| ||||| |||| | |||| || | ||||| ||| Sbjct 606264 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGATTATAAC 606323 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| |||||||||||| | || |||| Sbjct 606324 ATTCAGAAAGAATCTACGCTTCATTTGGT 606352 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||||||||||||||| || || ||||| || | ||| || || Sbjct 605915 AATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACGTTAGAAGTTGAACCATC 605974 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | || ||| || || |||||||| ||| | ||| || || Sbjct 605975 TGACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCA 606034 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||| | || | ||| || ||||| ||||| |||| | |||| | | ||||| || Sbjct 606035 ACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTATCAGATTATAA 606094 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| ||||||||||| | ||| |||| Sbjct 606095 CATTCAGAAAGAATCTACACTTCACTTGGT 606124 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| ||||| | || || ||||| || ||| | || || || Sbjct 605459 AATGCAGATCTTTGTGAAAACGCTGACTGGTAAAACTATCACCCTTGAGGTTGAACCATC 605518 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | || ||| ||||| || || ||||| | ||| || || Sbjct 605519 TGACACCATCGAGAATGTTAAAGCCAAGATCCAAGATAAGGAAGGAATTCCCCCAGACCA 605578 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||| | || | ||| || ||||| ||||| |||| | |||| || | ||||| || Sbjct 605579 ACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGATTATAA 605638 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||||||||||||| || | ||| |||| Sbjct 605639 CATTCAAAAAGAATCCACACTCCACTTGGT 605668 >seq805 Length=567825 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||||||||||| ||| || || ||||| || | ||| || || Sbjct 473590 ATGCAAATATTTGTCAAAACTTCAACTGGAAAGACCATAACGTTAGAAGTTGAACCATCT 473649 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || ||| || || |||||||| ||| | || || ||| Sbjct 473650 GACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCGCCAGACCAA 473709 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | || || ||||| ||||| |||| | |||| || | | ||| ||| Sbjct 473710 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGCTTATAAC 473769 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||||| | |||||| || | ||| |||| || Sbjct 473770 ATTCAGAGAGAATCCACACTCCACTTGGTTTT 473801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412718866449749