Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq792 140 2e-28 seq318 113 3e-20 seq805 95.1 8e-15 >seq792 Length=424820 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| || ||||| || || | |||| |||||||||||| || ||||| || Sbjct 97152 CCTCCCCTCAATCTGAGGACGAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGAA 97093 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| || || || ||||| |||||||||| || |||||| ||| | || Sbjct 97092 AGAGTTCGACCATCTTCGAGCTGTTTTCCAGCGAAGATCAATCTTTGCTGATCTGGGGGG 97033 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||| |||||||| | || || |||||| | | || | ||| || ||||| Sbjct 97032 ATCCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCAGAGGGTTCGACC 96973 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| |||||||| || || || || || ||||| Sbjct 96972 TCGAGGGTGATGGTCTTACCCGTGAGTGTTTTAACGAAAATTTGCAT 96926 >seq318 Length=663677 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || || |||||||||||||| || |||| | | || |||| Sbjct 606127 AGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGATAAGGTTCGGCCATCT 606068 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||||||| ||||| || ||||||| || ||| |||||| | || | ||||| ||||| Sbjct 606067 TCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCT 606008 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| ||| ||| | || | ||| | || || || | ||||||||| Sbjct 606007 TGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTC 605948 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | || || |||||||||||||| Sbjct 605947 TTTCCAGTTAAAGTTTTGACAAAGATCTGCAT 605916 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || || |||||||||||||| || || | | | | |||| Sbjct 605899 AGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGACAAGGTTCTGCCATCT 605840 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||||||| ||||| |||||||||| || ||| |||||| | || | || |||||||| Sbjct 605839 TCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCC 605780 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| ||| || || || || | || | || || || | ||| |||| Sbjct 605779 TGAATTTTGGCTTTTAC--ATTCTCGATGGTGTCGGATGGTTCCACTTCCAAGGTAATGG 605722 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || || || || |||||||||||||| Sbjct 605721 TCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 605688 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || |||||||||||||| || || | | | || |||| |||||||| ||||| |||||| Sbjct 606334 TCTTTCTGAATGTTATAATCTGACAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAG 606275 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 |||| || ||| |||||| | || | ||||| ||||| | ||||| ||| ||| Sbjct 606274 ATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTC 606215 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | || || || | ||| || |||||||| || || || || ||| Sbjct 606214 TCGATGGTGTCGGATGGTTCAACTTCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACA 606155 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 606154 AAGATCTGCAT 606144 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | ||| || || ||||||||||| || || | | | || |||| Sbjct 605671 AGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGACAAGGTTCGGCCATCT 605612 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||||||| ||||| || ||||||| || ||| |||||| | || | || ||||| || Sbjct 605611 TCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTATCT 605552 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||| || || || || | ||| | || || |||| ||| || | Sbjct 605551 TGGATCTTGGCTTTAAC--ATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGTGATAG 605494 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || || || || || |||||||||||||| Sbjct 605493 TTTTACCAGTCAGCGTTTTCACAAAGATCTGCAT 605460 >seq805 Length=567825 Score = 95.1 bits (104), Expect = 8e-15 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 34791 TCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCA 34850 ||||||||||||| | || | | | || |||| |||||||| ||||| |||||||||| Sbjct 473776 TCTGAATGTTATAAGCTGACAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCA 473717 Query 34851 GTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTA 34910 || ||| |||||| |||| | ||||| ||||| | ||||| ||| ||| | | Sbjct 473716 ATCTTTGTTGGTCTGGCGGAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGA 473657 Query 34911 TCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGA 34970 | | ||| | || || || | |||||||||||||| || || || ||||| | Sbjct 473656 TGGTGTCAGATGGTTCAACTTCTAACGTTATGGTCTTTCCAGTTGAAGTTTTGACAAATA 473597 Query 34971 TCTGCAT 34977 | ||||| Sbjct 473596 TTTGCAT 473590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325595974889267