Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq253 122 1e-22 seq318 100 4e-16 >seq253 Length=804807 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| || || || || || || ||| |||| || |||| | | Sbjct 281593 TGCAGATCTTTGTTAAAACTTTGACTGGTAAGACCATCACTCTTGAGGTCGAACCTTCGG 281534 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || ||||||| || ||| || ||| || || || |||||||| ||||||| Sbjct 281533 ATACCATCGAAAATGTTAAGGCTAAGATTCAAAACAAGGAGGGAATTCCACCAGATCAAC 281474 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| ||||||||||| || ||| | || || | || || |||| Sbjct 281473 AGCGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGACGTACTTTGTCGGACTACAATA 281414 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 ||||||| ||||| ||| | || | ||||| ||||| || |||||| Sbjct 281413 TACAAAAGGAATCTACTCTTCACCTTGTATTGCGATTGAGGGGAGGT 281367 >seq318 Length=663677 Score = 100 bits (110), Expect = 4e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | || || ||||| || || |||| || |||| | Sbjct 605461 TGCAGATCTTTGTGAAAACGCTGACTGGTAAAACTATCACCCTTGAGGTTGAACCATCTG 605520 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | ||||| ||| || || ||| ||| ||||| ||||| || || |||| Sbjct 605521 ACACCATCGAGAATGTTAAAGCCAAGATCCAAGATAAGGAAGGAATTCCCCCAGACCAAC 605580 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | || ||||| || |||||| | || ||| |||| || |||||||||| | Sbjct 605581 AAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGATTATAACA 605640 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||||||||| || |||| || || Sbjct 605641 TTCAAAAAGAATCCACACTCCACTTGGT 605668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785926688037560