Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq318 176 3e-39 seq805 156 3e-33 seq253 140 2e-28 seq792 131 1e-25 seq199 98.7 8e-16 seq12025 95.1 9e-15 >seq318 Length=663677 Score = 176 bits (194), Expect = 3e-39 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || |||||||| |||||||||||||| | | ||| || Sbjct 606131 ACGAAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGATAAGGTTCGGCC 606072 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| |||||| | ||||||||||| || || || ||||| |||||||| Sbjct 606071 ATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTT 606012 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||| || | || | |||||||| |||| ||||| | ||||| Sbjct 606011 GTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTAT 605952 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || |||||||| ||||| ||||| ||||||||| Sbjct 605951 GGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCATT 605915 Score = 170 bits (188), Expect = 1e-37 Identities = 172/224 (77%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || || |||||||||||||||||||||||||| | | ||| || Sbjct 605675 ACGAAGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGACAAGGTTCGGCC 605616 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| |||||| | ||||||||||| || || || ||||| || || || Sbjct 605615 ATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTT 605556 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | || ||| ||| | || | |||||||| |||| || ||||| || || Sbjct 605555 ATCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGTGAT 605496 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAAC 29794 |||||| ||||| | ||||| ||||| ||||||||| | |||| Sbjct 605495 AGTTTTACCAGTCAGCGTTTTCACAAAGATCTGCATTCTGAAAC 605452 Score = 170 bits (188), Expect = 1e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||| || |||||||||||||| |||||||| |||||||||||||| | Sbjct 606370 CCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCTGAC 606311 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || |||||||| ||||| | ||||||||||| || || || ||| Sbjct 606310 AAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGA 606251 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | ||| ||| || | || | ||||| || |||| ||| Sbjct 606250 ATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCGGATGGTTCAACT 606191 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || || ||||||| ||||| ||||| |||||||| Sbjct 606190 TCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 606144 Score = 145 bits (160), Expect = 6e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || |||||||| |||||||||||||| | | ||| | Sbjct 605903 ACGGAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGACAAGGTTCTGCC 605844 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||| ||||| | ||||||||||| || || || ||||| || || || Sbjct 605843 ATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTT 605784 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || |||||| | ||| ||| | || | ||||| || |||| ||||| | || | Sbjct 605783 GTCCTG-AATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCACTTCCAAGGTAA 605725 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||||| ||||| ||||| |||||||| Sbjct 605724 TGGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 605688 >seq805 Length=567825 Score = 156 bits (172), Expect = 3e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 ||||| || || ||||||||| | |||||||||||| | | | ||| || ||| || Sbjct 473798 ACCAAGTGGAGTGTGGATTCTCTCTGAATGTTATAAGCTGACAAGGTTCGGCCATCTTCC 473739 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 |||||||| ||||| | ||||||||||| || || |||||||| |||||||||||||| Sbjct 473738 AGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGCGGAATGCCCTCTTTGTCTTGG 473679 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||| ||| || | || | |||||||| |||| ||||| | ||||| || || Sbjct 473678 ATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTCTTT 473619 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| | ||||| |||||||| ||||| Sbjct 473618 CCAGTTGAAGTTTTGACAAATATTTGCAT 473590 >seq253 Length=804807 Score = 140 bits (154), Expect = 2e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| |||| || | ||||| || ||||| ||||| || || || |||| Sbjct 281368 CCTCCCCTCAATCGCAATACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGAC 281427 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | |||||| |||||| | || || | || ||||| || ||| Sbjct 281428 AAAGTACGTCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGA 281487 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| |||| ||| ||| || | || ||| |||| | || || ||| |||| || Sbjct 281488 ATTCCCTCCTTGTTTTG-AATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGAC 281546 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||| || || || ||||| || ||||||||||| |||||||| || Sbjct 281547 CTCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCATCTT 281597 >seq792 Length=424820 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| | || || | ||| || ||||| || || ||||| || || || | | Sbjct 97152 CCTCCCCTCAATCTGAGGACGAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGAA 97093 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| ||||| ||||| ||||| | ||||||||||||||||| || || Sbjct 97092 AGAGTTCGACCATCTTCGAGCTGTTTTCCAGCGAAGATCAATCTTTGCTGATCTGGGGGG 97033 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || ||||| |||| | |||||||| |||| || Sbjct 97032 ATCCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCAGAGGGTTCGACC 96973 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || | |||||||| || || ||||| Sbjct 96972 TCGAGGGTGATGGTCTTACCCGTGAGTGTTTTAACGAAAATTTGCAT 96926 >seq199 Length=980398 Score = 98.7 bits (108), Expect = 8e-16 Identities = 173/249 (69%), Gaps = 15/249 (6%) Strand=Plus/Minus Query 29551 TATCGTTGT-CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTT 29609 |||| ||| ||||||||| ||| || | ||||| |||||||| ||||| || || Sbjct 850416 TATCTTTGCACCTCCCCTC----GCAATACAAGGTGAAGAGTGGATTCCTTTTGTATATT 850361 Query 29610 ATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC--------AAT 29661 || |||| | || || ||| || | |||||| |||||| | || || Sbjct 850360 GTAGTCCGACAAAGTACGTCCATCTTCCAATTGTTTACCAGCAAAAATGCAAAAATTAAA 850301 Query 29662 CTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTAC 29720 | || || || || ||||| ||||| |||||||| ||| || | || ||| |||| | Sbjct 850300 CACTGTTGGTCTGGTGGAATTCCCTCCTTGTCTTG-AATCTTAGCCTTAACATTTTCGAT 850242 Query 29721 AGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATAT 29780 | || ||| | | || |||||||| || || || ||||| || ||||||||||| || Sbjct 850241 GATATCCGAAGATCCGACCTCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGAT 850182 Query 29781 CTGCATTTT 29789 |||||| || Sbjct 850181 CTGCATCTT 850173 >seq12025 Length=7061 Score = 95.1 bits (104), Expect = 9e-15 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 || ||||| || ||||| | ||| |||||||| ||| || | || ||| |||| | || Sbjct 4348 TGTTGATCTGGTGGAATTCTCTCCTTGTCTTG-AATCTTAGCCTTAACATTTTCGATGGT 4290 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || |||||||| || |||||||| || || || ||||| || ||||||||||| ||||| Sbjct 4289 ATCCGAAAGTTCGACCTCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTG 4230 Query 29784 CATTTT 29789 ||| || Sbjct 4229 CATCTT 4224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385104678304413