Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq643 100 4e-16 >seq643 Length=490110 Score = 100 bits (110), Expect = 4e-16 Identities = 221/321 (69%), Gaps = 19/321 (6%) Strand=Plus/Plus Query 168642 GAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCT 168701 || ||| ||||||||||||||||||| || ||||| ||||||||||||||| |||||| Sbjct 176651 GATAGAGAAGAAGGTGATTTAGGTCCGATATATGGTTTTCAATGGAGACATTTTGGAGCT 176710 Query 168702 CAATATATTGACTGTG-ATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAAC 168760 | || | | | || || |||| || | ||||| | ||||| ||| ||| Sbjct 176711 GAGTACAAAG-GTATGCATGCAGACTATAAAAATAAAGGAATTGACCAGTTAGCTCATGT 176769 Query 168761 TATAAATACTTTACACAACAA-TCCGGAAAATAGAAGAATATTAATTAATAGTTGGGATG 168819 ||||||||| || | ||||| || | ||||| | || |||| || | ||| Sbjct 176770 AATAAATACTATA-AAAACAAGACCTAATGATAGACGCATCATAAT-----GTGTGCATG 176823 Query 168820 TACCACAACTTGATA------AAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTT 168873 | | | | |||||| |||||| | || ||||| || ||| || || |||| Sbjct 176824 GAACCCTA-TTGATATCCCAGAAATGGCATTACCTCCTTGCCATTGTTTGGTCCAGTTTT 176882 Query 168874 ATGTAAGGAAAAAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGAT 168933 ||| |||||| || || ||| | ||||| | |||||| |||| || ||| | ||| Sbjct 176883 TTGT-AGGAAATGATGAA-CTTTCA-TGTCAACTTTATCAACGATCTGCAGATATGGGAC 176939 Query 168934 TAGGAGTACCTTATAATATTG 168954 | ||||| |||| |||||||| Sbjct 176940 TTGGAGTGCCTTTTAATATTG 176960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634983926410040