Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq643 107 3e-18 >seq643 Length=490110 Score = 107 bits (118), Expect = 3e-18 Identities = 220/317 (69%), Gaps = 15/317 (5%) Strand=Plus/Plus Query 180546 GAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAAT 180605 || |||||||||||||||| || || ||||| ||||||||||||||| |||||| | | Sbjct 176655 GAGAAGAAGGTGATTTAGGTCCGATATATGGTTTTCAATGGAGACATTTTGGAGCTGAGT 176714 Query 180606 ATATTGACTGTG-ATACCAACTATATCGGGCAAGGTATAGACCAATTAAGCCAAGTTATA 180664 | | | | || || | |||||| |||| || ||||| ||| || || ||| Sbjct 176715 ACAAAGG-TATGCATGCAGACTATAAAAATAAAGGAATTGACCAGTTAGCTCATGTAATA 176773 Query 180665 GAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATAGTTGGAATGTATCA 180724 | |||||||||| || || |||| ||| |||||| || || | ||| | | Sbjct 176774 AATACTATAAAAAC-AAGACCTAATGAT--AGACGCATCATA-AT-GTGTGCATGGAACC 176828 Query 180725 CAATTA-----CCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGTTA 180779 | ||| ||||| ||||| | || || || || |||||||| || |||| ||| Sbjct 176829 CTATTGATATCCCAGAAATGGCATTACCTCCTTGCCATTGTTTGGTCCAGTTTTTTGTAG 176888 Query 180780 GAAATAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTAGGTG 180839 ||||| | | | || || | ||| | |||||| ||||||||||| | ||| | || | Sbjct 176889 GAAATGA--TGAACTTTCAT-GTCAACTTTATCAACGATCTGCAGATATGGGACTTGGAG 176945 Query 180840 TACCATATAATATTGCT 180856 | || | |||||||||| Sbjct 176946 TGCCTTTTAATATTGCT 176962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655080196937000