Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq643 93.3 5e-14 >seq643 Length=490110 Score = 93.3 bits (102), Expect = 5e-14 Identities = 217/320 (68%), Gaps = 17/320 (5%) Strand=Plus/Plus Query 171727 GAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCT 171786 || ||| ||||||||||||||||||| || ||||| ||||||||||||||| || ||| Sbjct 176651 GATAGAGAAGAAGGTGATTTAGGTCCGATATATGGTTTTCAATGGAGACATTTTGGAGCT 176710 Query 171787 CAATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACT 171846 | || | | || |||| || | | ||||| | ||||| ||| ||| Sbjct 176711 GAGTACAAAGGTATGCATGCAGACTATAAAAATAAAGGAATTGACCAGTTAGCTCATGTA 176770 Query 171847 ATTAATACTTTACAAAACAACCCAGAAAG-TAGAAGGATGTTAATTGATAGTTGGAATGT 171905 || |||||| || ||||||| | || | |||| | || |||| || | ||| Sbjct 176771 ATAAATACTATA-AAAACAAGACCTAATGATAGACGCATCATAAT-----GTGTGCATGG 176824 Query 171906 ACCTCAACTTGATA------AAATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTA 171959 | | | | |||||| |||||| | ||||||||||| ||| | || |||| Sbjct 176825 AACCCTA-TTGATATCCCAGAAATGGCATTACCTCCTTGCCATTGTTTGGTCCAGTTTTT 176883 Query 171960 TGTCAGaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATT 172019 ||| || ||| || || ||| | ||||| | |||||| |||| || ||| | ||| | Sbjct 176884 TGT-AGGAAATGATGAA-CTTTCA-TGTCAACTTTATCAACGATCTGCAGATATGGGACT 176940 Query 172020 GGGGGTACCTTATAATATTG 172039 || || |||| |||||||| Sbjct 176941 TGGAGTGCCTTTTAATATTG 176960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628339552980480