Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq643 100 7e-16 seq160 96.9 8e-15 >seq643 Length=490110 Score = 100 bits (110), Expect = 7e-16 Identities = 259/382 (68%), Gaps = 16/382 (4%) Strand=Plus/Minus Query 58862 ATATTAAAAGGGATTCCAAGAAACATATCACCACTACGTTGATAAAATTGTAGATTAAGA 58921 ||||||||||| | |||||| |||||| || |||||||||| ||| | || || | Sbjct 176958 ATATTAAAAGGCACTCCAAGTCCCATATCTGCAGATCGTTGATAAAGTTG-ACATGAA-A 176901 Query 58922 GTGTCATCTGCTTCTACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTA 58981 || ||||| | ||||| |||| || ||| ||| |||||||| | |||||||| Sbjct 176900 GT-TCATCATTTCCTACAAAAAACTGGACCAAACAATGGCAAGGAGGTAATGCCATTTCT 176842 Query 58982 TCAATATCACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCAT-TTTT 59040 |||||| | |||||||||| | || ||||| | | || | |||| | |||| Sbjct 176841 GGGATATCAATAGGGTTCCATGCACACATTATGATGCGTCTATCATTA-GGTCTTGTTTT 176783 Query 59041 AATA--AGTTCTTCACAATGTTTTATTTGGTCAAATCC---ATTAGTATATTCAGTATTG 59095 ||| | || || || ||| || ||||||| ||| ||| |||| || | || Sbjct 176782 TATAGTATTTATT-AC-ATGAGCTAACTGGTCAATTCCTTTATTTTTATAGTCTGCAT-- 176727 Query 59096 GCAT--CAATGTATTTATCTCCCCAATAACGCCATTGAAAACCATATACAGGTCCAAGAG 59153 |||| | |||| | | |||| ||| | ||||||||||||||||| || || | | Sbjct 176726 GCATACCTTTGTACTCAGCTCCAAAATGTCTCCATTGAAAACCATATATCGGACCTAAAT 176667 Query 59154 TTCCTTCAGGATATTCATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTACCAT 59213 ||||| || |||| ||| ||||| | || | |||||| ||| | | Sbjct 176666 CACCTTCTTCTCTATCTTTTAGGCCAACGGAGTCTAAGAACTGTCTTGTACTATTTGCGT 176607 Query 59214 CCCAAATATGAACATTATTATC 59235 ||||||||||||| || ||||| Sbjct 176606 CCCAAATATGAACTTTTTTATC 176585 >seq160 Length=904994 Score = 96.9 bits (106), Expect = 8e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 131859 GACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCT 131918 || |||||||||| ||| |||||||| ||||| || || ||| ||| ||||| | Sbjct 788968 GAATTGTAGCTTTCGCTGCAGTTGAAGGGATATTTTTCTCTGGTAGTTTTGCAGCTATAT 788909 Query 131919 TTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGA 131978 | ||| | ||||||||||| |||||||| || | | || || ||| |||| || || | Sbjct 788908 TCTGGTTGAAGAAGCGTGGTTTGATGCCAGGTTTAACTTTCTCAAATGAATTGATTTCCA 788849 Query 131979 GAGATGAAGCATTGCATACTGAATTTGC 132006 | ||||||| |||||| ||| ||||| Sbjct 788848 GGGATGAAGGTTTGCATTGTGACTTTGC 788821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186441879090673