Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq253 114 8e-21 seq318 113 3e-20 >seq253 Length=804807 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || || || | || ||||| || |||||||| ||||| || | Sbjct 281366 CACCTCCCCTCAATCGCAATACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCG 281425 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | || ||| | || ||||||||||| || |||||||| |||||||| |||||| | | Sbjct 281426 ACAAAGTACGTCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTG 281485 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || |||| ||| || | | ||||| || | ||| || | ||| Sbjct 281486 GAATTCCCTCCTTGTTTTGAATCTT-AGCCTTAACATTTTCGATGGTATCCGAAGGTTCG 281544 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| ||||| || ||||| || || ||||| |||||||||||||| Sbjct 281545 ACCTCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCAT 281594 >seq318 Length=663677 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || ||| |||||||| ||||| ||||| || Sbjct 605687 ACCACCACGGAGACGAAGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGA 605628 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || |||| ||||||||| ||||| ||||| | || || ||| | || Sbjct 605627 CAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGG 605568 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || ||| ||||| || | |||||| || ||| | Sbjct 605567 AATTCCTTCCTTATCTTGGATCTTGGCTTT-AACATTCTCGATGGTGTCAGATGGTTCAA 605509 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| |||||||| || | |||||| |||||||||||||| Sbjct 605508 CCTCAAGGGTGATAGTTTTACCAGTCAGCGTTTTCACAAAGATCTGCAT 605460 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || ||||| || ||||| ||||| || Sbjct 606143 ACCACCACGGAGACGAAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGA 606084 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || |||| ||||||||| ||||| ||||| | || || ||| | || Sbjct 606083 TAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGG 606024 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| ||||| ||||| | | || | |||||| || ||| | Sbjct 606023 AATGCCCTCTTTGTCTTGGATTTTAGCTTTCA-CGTTCTCGATGGTGTCAGATGGTTCAA 605965 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||| || || || || ||||| ||||| |||||||||||||| Sbjct 605964 CTTCTAACGTTATGGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCAT 605916 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | |||||||| || || ||||| || ||||| ||||| || Sbjct 606370 CCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCTGAC 606311 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || |||| ||||||||| || || ||||| | || || ||| | || Sbjct 606310 AAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGA 606251 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| ||||| ||||| | | || | ||||||| || ||| || Sbjct 606250 ATGCCCTCTTTGTCTTGGATTTTAGCTTTCA-CGTTCTCGATGGTGTCGGATGGTTCAAC 606192 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || || || || |||| ||||| ||||||||||||||| Sbjct 606191 TTCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCATA 606143 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || || ||||| || ||||| ||||| || Sbjct 605914 CCACCACGGAGACGGAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGAC 605855 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | | || |||| ||||||||| || || ||||| | || || ||| | || Sbjct 605854 AAGGTTCTGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGA 605795 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| |||||| ||| | ||| || | ||||||| || |||||| Sbjct 605794 ATTCCTTCCTTGTCCTGAATTTTGGCTTTTA-CATTCTCGATGGTGTCGGATGGTTCCAC 605736 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || || || || |||| ||||| ||||||||||||||| Sbjct 605735 TTCCAAGGTAATGGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCATA 605687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328606279690560