Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq318 138 3e-27 seq253 98.7 2e-15 >seq318 Length=663677 Score = 138 bits (152), Expect = 3e-27 Identities = 157/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| || || ||||| || || || |||||||||||| || ||| Sbjct 605691 CAGATCTTTGTCAAAACTCTAACTGGAAAGACCATTACCTTGGAAGTGGAACCATCCGAC 605750 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || ||||| ||| ||||| || || ||||||||| || ||| || Sbjct 605751 ACCATCGAGAATGTAAAAGCCAAA-ATTCAGGACAAGGAAGGAATTCCCCCAGACCAACA 605809 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | |||||||| ||||| || |||||||||| || || ||| | ||||| ||| | Sbjct 605810 AAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCAGAACCTTGTCTGATTATAACAT 605869 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||||||| ||||| |||||| | ||| Sbjct 605870 TCAGAAAGAATCTACACTTCACTTGGTT 605897 >seq253 Length=804807 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | || || || || |||||| | || || ||| ||| || Sbjct 281591 CAGATCTTTGTTAAAACTTTGACTGGTAAGACCATCACTCTTGAGGTCGAACCTTCGGAT 281532 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||||||| | || || |||||| || || |||| Sbjct 281531 ACCATCGAAAATGTTAAGGCTAAGATTCAAAACAAGGAGGGAATTCCACCAGA---TCAA 281475 Query 206293 -AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAAC 206349 || || || || || || || || |||||||||||| | |||||| | || ||||| Sbjct 281474 CAGCGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGACGTACTTTGTCGGACTACAAT 281415 Query 206350 GTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 | || || || ||||||||||||||||| ||| || Sbjct 281414 ATACAAAAGGAATCTACTCTTCACCTTGTATTGCGA 281379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181451439266953