Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq792 134 1e-26 seq253 123 3e-23 seq318 104 2e-17 seq199 98.7 1e-15 seq74 98.7 1e-15 >seq792 Length=424820 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || | || | ||||| || || ||||| ||||| ||||| ||||||||| | Sbjct 97152 CCTCCCCTCAATCTGAGGACGAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGAA 97093 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || || || ||||||||||| || || || ||||| | |||||||| || || Sbjct 97092 AGAGTTCGACCATCTTCGAGCTGTTTTCCAGCGAAGATCAATCTTTGCTGATCTGGGGGG 97033 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || ||||| || || ||||| || | ||||| || | ||| || Sbjct 97032 ATCCCTTCCTTGTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCAGAGGGTTCGACC 96973 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| ||||| || | |||||||||||||||||||| Sbjct 96972 TCGAGGGTGATGGTCTTACCCGTGAGTGTTTTAACGAAAATTTGCAT 96926 >seq253 Length=804807 Score = 123 bits (136), Expect = 3e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| || | |||||| || ||||| || || ||||||||||| || |||||||| | | Sbjct 281368 CCTCCCCTCAATCGCAATACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGAC 281427 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | || || | ||||| || |||||||| |||||||| ||||| || || Sbjct 281428 AAAG-TACGTCCATCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGG 281486 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || | |||||| || || || || | || || || | ||| || Sbjct 281487 AATTCCCTCCTTGTTTTGAATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGAC 281546 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || ||||| ||||| ||||| || ||||||||||| || || ||||| ||| Sbjct 281547 CTCAAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCATCTTG 281598 >seq318 Length=663677 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC- 134542 || ||||||||||| || | || | || ||||| ||||| || |||||||| || || Sbjct 606373 TTGCCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCT 606314 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | ||| ||| | || || || ||||| || || || ||||| | || || || || Sbjct 606313 GACAA-GGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGG 606255 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || ||||| ||||| ||||| ||||| ||| || || | |||||||| | ||| Sbjct 606254 GGGAATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCGGATGGTTC 606195 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | ||||| || || || |||| |||||| || || || ||||| Sbjct 606194 AACTTCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 606144 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 || || | ||| || | || | ||| || |||||||| ||||||||||| || || | | Sbjct 605686 CCACCACGGAGACGAAGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGAC 605627 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || ||| | || || || ||||| || ||||| ||||| | || || || || || Sbjct 605626 AA-GGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGG 605568 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || ||||| || || ||| || || | ||||| || | ||| || Sbjct 605567 AATTCCTTCCTTATCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAAC 605508 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || |||||||| || | ||||| || || || |||||| || Sbjct 605507 CTCAAGGGTGATAGTTTTACCAGTCAGCGTTTTCACAAAGATCTGCATTCTG 605456 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || || ||||| || |||||||| || || Sbjct 606142 CCACCACGGAGACGAAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGAT 606083 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || || ||||| || ||||| ||||| | || || || || || Sbjct 606082 AAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGA 606023 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| ||||| ||||| ||| || || | ||||| || | ||| || Sbjct 606022 ATGCCCTCTTTGTCTTGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACT 605963 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || ||||| || || ||||||||||| || || || |||||| Sbjct 605962 TCTAACGTTATGGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCATT 605915 >seq199 Length=980398 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/229 (70%), Gaps = 10/229 (4%) Strand=Plus/Minus Query 134498 TCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT-CGCCAACGGTGTGAG 134556 |||||| || ||||| || |||||||||||||| || ||||||| || ||| || | Sbjct 850399 TCGCAATACAAGGTGAAGAGTGGATTCCTTTTGTATATTGTAGTCCGACAA-AGTACGTC 850341 Query 134557 AGTCGTCGAGCTGTTTGCC--------TGCAAAAATCAAACGCTGCTGATCGGGCGGTAT 134608 || || | ||||| || ||||||||| |||| ||| || || || || || Sbjct 850340 CATCTTCCAATTGTTTACCAGCAAAAATGCAAAAATTAAACACTGTTGGTCTGGTGGAAT 850281 Query 134609 GCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTC 134668 || || || |||||||| || || || || | | || || ||| | || || Sbjct 850280 TCCCTCCTTGTCTTGAATCTTAGCCTTAACATTTTCGATGATATCCGAAGATCCGACCTC 850221 Query 134669 GAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| ||||| ||||| || ||||||||||| || || ||||| ||| Sbjct 850220 AAGAGTGATGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCATCTTG 850172 >seq74 Length=1577532 Score = 98.7 bits (108), Expect = 1e-15 Identities = 211/313 (67%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| | ||| ||| || ||| || || ||||| ||| |||||| || || | || Sbjct 1091637 CTACCTCCTGAGAATAAATGGCAAAATAGCTGAACGTCCTCAGCACATGTTGATGAGAGT 1091696 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 ||||| || || |||||||||||||| ||||| || | | || ||| | ||||||| Sbjct 1091697 CGCGGTCGGGATCCACGGCGAAGACATAGACGCAGCTATTAACACTTACAACTTGATGTC 1091756 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCAC-AAACGCGCCTC 7702 ||| | || ||||| ||| || || |||| | || | ||| ||| |||| Sbjct 1091757 GGAGAAGTATTTCACGCATGCTAGCCCTACTTTGTTCTCGGCTGCCACTCCACG-ACCTC 1091815 Query 7703 AATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACA 7762 || |||| || || || ||||||| |||| ||||||||| | || || | ||| Sbjct 1091816 AACTGTCTTCTTGCTTCTTGCTAATGATGCCGGAAGACAGCTTGGAGGGGGTGAGCAAGT 1091875 Query 7763 CGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACG 7822 ||| | |||||| |||||| || | || || || || || ||||||| || Sbjct 1091876 GTCTGTCCAGGTGCGCCGTTATTTCAAAGTCCGCGGGAGGGATCGGCGTGAACGTGCACA 1091935 Query 7823 ACGTGCGCGCCAA 7835 || | || ||||| Sbjct 1091936 ACATACGAGCCAA 1091948 Score = 98.7 bits (108), Expect = 1e-15 Identities = 211/313 (67%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| | ||| ||| || ||| || || ||||| ||| |||||| || || | || Sbjct 1094968 CTACCTCCTGAGAATAAATGGCAAAATAGCTGAACGTCCTCAGCACATGTTGATGAGAGT 1095027 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 ||||| || || |||||||||||||| ||||| || | | || ||| | ||||||| Sbjct 1095028 CGCGGTCGGGATCCACGGCGAAGACATAGACGCAGCTATTAACACTTACAACTTGATGTC 1095087 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCAC-AAACGCGCCTC 7702 ||| | || ||||| ||| || || |||| | || | ||| ||| |||| Sbjct 1095088 GGAGAAGTATTTCACGCATGCTAGCCCTACTTTGTTCTCGGCTGCCACTCCACG-ACCTC 1095146 Query 7703 AATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACA 7762 || |||| || || || ||||||| |||| ||||||||| | || || | ||| Sbjct 1095147 AACTGTCTTCTTGCTTCTTGCTAATGATGCCGGAAGACAGCTTGGAGGGGGTGAGCAAGT 1095206 Query 7763 CGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACG 7822 ||| | |||||| |||||| || | || || || || || ||||||| || Sbjct 1095207 GTCTGTCCAGGTGCGCCGTTATTTCAAAGTCCGCGGGAGGGATCGGCGTGAACGTGCACA 1095266 Query 7823 ACGTGCGCGCCAA 7835 || | || ||||| Sbjct 1095267 ACATACGAGCCAA 1095279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505244297710360