Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq160 232 5e-56 seq643 212 5e-50 seq148 102 6e-17 >seq160 Length=904994 Score = 232 bits (256), Expect = 5e-56 Identities = 547/806 (68%), Gaps = 34/806 (4%) Strand=Plus/Minus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 ||||||||| ||||||| || ||||| ||||| || | || |||||| || ||| Sbjct 789417 AGAAAATCCTGGACGGTTTGTAGTATTTCCTATTCAGTACAAAGATATATGGACAAAGTA 789358 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGC 43803 ||| ||||| | || || || |||||| | || |||||||| || || ||||| Sbjct 789357 TAAAGAAGCAGAAGCTTCCTTCTGGACAACTGAGGAAGTTGACCTGTCTCGAGACTCGAA 789298 Query 43804 ACATTGGATTGCAT---TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTT 43860 || |||| | || | || || |||| |||||| || || ||||| || || Sbjct 789297 GCAATGGAA-GAATCTCTCTAAGGAC--GAAAGACATTTCATTTCGCATGTTTTAGCCTT 789241 Query 43861 TTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCG---GTTTGCG-CAAG 43916 ||| ||||| || || || ||||||||||| ||||||| | || | || | Sbjct 789240 TTTCGCTGCTTCTGATGGTATTGTCAATGAAAA----CTTAGTCGAGAGATTCAGTCAGG 789185 Query 43917 AAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTC 43976 | ||||| |||||||||| || || ||||| || |||||||| || || || || |||| Sbjct 789184 AGGTTCAGATACCAGAAGCTCGCTGCTTTTACGGTTTTCAAATAGCTATGGAGAACATTC 789125 Query 43977 ATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA-TGGGCACGAGAAGCAT 44035 | || |||||||| ||| |||||||||| || || || | || || | ||| || Sbjct 789124 ACTCTGAAATGTATAGTATTCTGATAGAAACCTATATACAGGACCCTACAGAAAAAGAAT 789065 Query 44036 CGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAA-GCAGACTGGGCCCT 44094 ||||| || || || ||||| | ||| | || | ||| || | |||||||| Sbjct 789064 -ATTTGTTCAACGCCATCGAAACGATGCCT-TGTGTAGCGAAAAAGGCGAATTGGGCCCT 789007 Query 44095 TAAATGGATAA-ATTCAAATGAT--TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGT 44151 || ||||||| | |||| | | |||| | |||||| |||| || || || | || Sbjct 789006 CAATTGGATAAGCTCCAAAAGCTCCACTTTCGCTGAACGAATTGTAGCTTTCGCTGCAGT 788947 Query 44152 GGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211 ||||| || || || || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 788946 TGAAGGGATATTTTTCTCTGGTAGTTTTGCAGCTATATTCTGGTTGAAGAAGCGTGGTTT 788887 Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271 |||||| || || || || |||||||| || || | |||||||| || ||||| || Sbjct 788886 GATGCCAGGTTTAACTTTCTCAAATGAATTGATTTCCAGGGATGAAGGTTTGCATTGTGA 788827 Query 44272 TTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA--CAATT 44329 ||||| ||| | ||| | || || | || || || | |||| || Sbjct 788826 CTTTGCCTGC---CTTCTTTTCTCTCATTTAGTTCAGAAACCGTC--GCAAGAACGTATC 788772 Query 44330 ACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCT 44389 || |||| || || || || || || |||||||||||| | || ||| | ||| Sbjct 788771 ACGAATATCATTTGTGATGCTGTTAAAATCGAACAAGAATTTCTAACTGAAGCTCTGCCT 788712 Query 44390 GTAAATTTAATAGGAATGAA-TGAACT--TTTGATGAACCAATATATTGAATACATTGCA 44446 || | |||||| |||||||| || | | || || || ||||||||| || |||| Sbjct 788711 GTCAGTTTAATCGGAATGAATTGTAATGCAATG-TGTAC--ATATATTGAGTATGTTGCT 788655 Query 44447 GATCGTTTACTTTTGGAACTGGGTTG 44472 ||| | || || |||||| ||||| Sbjct 788654 GATAGGTTGCTGAAGGAACTTGGTTG 788629 >seq643 Length=490110 Score = 212 bits (234), Expect = 5e-50 Identities = 362/516 (70%), Gaps = 8/516 (2%) Strand=Plus/Plus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| || |||| || |||| | ||||||| |||| ||| ||||| || | ||| Sbjct 176489 TTTCCTTTATTAACAACGAAAAGGGTATTTTGGAGAGGCGTTGTCGAAGAGCTACTCTGG 176548 Query 40752 TTTATCAAAGGTTGTACTAATGC-TAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAA 40810 ||||| | ||| |||| ||||| | ||| | | | || | | ||| || |||||| | Sbjct 176549 TTTATTAGAGGAAGTACGAATGCCTTTGAACTAAGC-GATAAAAAAGTTCATATTTGGGA 176607 Query 40811 TGCGCACAGTTCTAAAACA--TATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGT 40868 || | ||| | || ||| | || | || | | || || ||||||| || |||||| Sbjct 176608 CGCAAATAGTAC-AAGACAGTTCTTAGACTC-CGTTGGCCTAAAAGATAGAGAAGAAGGT 176665 Query 40869 GATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATG 40928 ||| | ||||| | ||||| ||||| | | ||||||||||||| | || | |||| Sbjct 176666 GATTTAGGTCCGATATATGGTTTTCAATGGAGACATTTTGGAGCTGAGTACAAAGGTATG 176725 Query 40929 TACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAA 40988 | | || |||| ||||||||||| || || ||| || ||| |||| || ||| Sbjct 176726 CATGCAGACTATAAAAATAAAGGAATTGACCAGTTAGCTCATGTAATAAATACTATAAAA 176785 Query 40989 TCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTG 41048 | || || |||| || ||| |||| || |||||||| | || | | Sbjct 176786 ACAAGACCTAATGATAGACGCATCATAATGTGTGCATGGAACCCTATTGATATCCCAGAA 176845 Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTC-AGTTTTACGTTTGCAATGGTGAACTGTC 41107 |||||||| || ||||| |||| ||| ||| |||||| || | |||| |||||| || Sbjct 176846 ATGGCATTACCTCCTTGCCATT-GTTTGGTCCAGTTTTTTGTAGGAAATGATGAACTTTC 176904 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 ||||||| | |||||| |||| | || |||||||| || || || ||||| || || || Sbjct 176905 ATGTCAACTTTATCAACGATCTGCAGATATGGGACTTGGAGTGCCTTTTAATATTGCTAG 176964 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||| ||| |||| || |||||||| ||||||||||| Sbjct 176965 TTACGCTTTGCTAACATATATGATAGCACACGTTAC 177000 >seq148 Length=1013487 Score = 102 bits (112), Expect = 6e-17 Identities = 110/146 (75%), Gaps = 6/146 (4%) Strand=Plus/Plus Query 19552 CACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA--- 19608 ||||| ||||| | |||||| | ||||| || |||||||||||||| || | | | Sbjct 490428 CACATAATAATCTTTGATGAAATTGACGCCATTTGTAAGCAAAGAGGATCAGTAGCAGGA 490487 Query 19609 ---AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAAC 19665 | ||| || ||||| |||||||| ||||||||||| |||||| | || || || | Sbjct 490488 AATACTGGTGTGCATGATACTGTTGTTAATCAACTCCTTTCAAAAATTGATGGAGTGGAA 490547 Query 19666 CAACTGAATAATATTTTAGTTATTGG 19691 || || ||||||||||| || ||||| Sbjct 490548 CAGCTCAATAATATTTTGGTGATTGG 490573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397337840429965