Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq74 123 3e-23 seq160 105 8e-18 seq304 82.4 1e-10 >seq74 Length=1577532 Score = 123 bits (136), Expect = 3e-23 Identities = 247/359 (69%), Gaps = 8/359 (2%) Strand=Plus/Minus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 ||||| || ||||| ||||| ||||| |||||| || ||||| | ||| || Sbjct 1095852 GCGATGGAGGCCAAGTTGCACACAGCGACCTCATCGGGGGAGGTATACTCGATAATCTCC 1095793 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || |||||| ||||| ||||| || | ||||| |||||||| ||| ||||||| Sbjct 1095792 GTGCACAAGTTGCTGCTCTTGATCGTGCCAAGATTCTGCTGGTTACTTTTCCTGTTGCAA 1095733 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 || ||||||||||||||||| || || || ||||| ||| ||| || || ||| Sbjct 1095732 GCGTCCTTGTAGAGCATGTATGGAGTACCAGTCTCTACCTGGGATACAGTGATGGCTTTC 1095673 Query 111416 CAAACATCGGCGGCTGGTACAATGGC-GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 111474 || || || || |||| | || | | | | || || |||||||| | || Sbjct 1095672 CACACGTCACGTGCCGGTA-ACTGCCTGACGAACTTGCCTTCAGCCTCGTAGCGTTCATA 1095614 Query 111475 GAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACC--TGGTGCCTTGTCTGGACA 111531 ||| ||||||||||| ||| | || ||||| || || ||| || || || || Sbjct 1095613 GAGCTTCTCAAACTCCTCGCCC-CAGCAATCGGAAAGCCCCTTGGAGCGATG--CGGGCA 1095557 Query 111532 GAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | |||||||| ||| | |||| |||| ||||||||| | ||| || ||||||| Sbjct 1095556 CATCAGAGACCAAGTACCGTCAGCCTCGACCCTCTTCATGAACAAGTCAGGGATCCACA 1095498 Score = 118 bits (130), Expect = 1e-21 Identities = 246/359 (69%), Gaps = 8/359 (2%) Strand=Plus/Minus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 ||||| || ||||| ||||| ||||| |||||| || ||||| | ||| || Sbjct 1092521 GCGATGGAGGCCAAGTTGCACACAGCGACCTCATCGGGGGAGGTATACTCGATAATCTCC 1092462 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || |||||| ||||| ||||| || | ||||| |||||||| ||| ||||||| Sbjct 1092461 GTGCACAAGTTGCTGCTCTTGATCGTGCCAAGATTCTGCTGGTTACTTTTCCTGTTGCAA 1092402 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 |||||||||||||||||||| || || || ||||| ||| ||| || || ||| Sbjct 1092401 GCATCCTTGTAGAGCATGTAAGGAGTACCAGTCTCTACCTGGGATACAGTGATGGCTTTC 1092342 Query 111416 CAAACATCGGCGGCTGGTACAATGGC-GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTA 111474 || || || || |||| | || | | | | || || |||||||| | || Sbjct 1092341 CACACGTCACGTGCCGGTA-ACTGCCTGACGAACTTGCCTTCAGCCTCGTAGCGTTCATA 1092283 Query 111475 GAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACC--TGGTGCCTTGTCTGGACA 111531 ||| ||||||||||| ||| | || ||| || || ||| || || || || Sbjct 1092282 GAGCTTCTCAAACTCCTCGCCC-CAGCAAATGGAAAGCCCCTTGGAGCGATG--CGGGCA 1092226 Query 111532 GAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACA 111590 | |||||||| ||| | |||| |||| ||||||||| | ||| || ||||||| Sbjct 1092225 CATCAGAGACCAAGTACCGTCAGCCTCGACCCTCTTCATGAACAAGTCAGGGATCCACA 1092167 >seq160 Length=904994 Score = 105 bits (116), Expect = 8e-18 Identities = 181/256 (71%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || || | ||| ||||| | |||||| | |||||||||||| || ||| Sbjct 788820 GGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAGAAAGTTAAACC 788879 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 122776 |||||| | ||| |||||||||||||| | ||||| ||| || | || ||||| || | Sbjct 788880 TGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTA-CCAGAGAAAAATA 788938 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATC-A 122835 | || || || || || || | || ||||| ||||| | | ||| |||| | | Sbjct 788939 TCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGTG-GAGCTTTTGGAGCTT 788997 Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCA 122895 | ||| || | ||||| |||||||| ||| | | ||| || | |||| |||||| | Sbjct 788998 ATCCAATTGAGGGCCCAATTCGCCTTTTTCGCTACACAAGGCATCGTTTCGATGGCGTTG 789057 Query 122896 AATAACTGCTTCTTTT 122911 || || | ||||||| Sbjct 789058 AACAAAT-ATTCTTTT 789072 >seq304 Length=657134 Score = 82.4 bits (90), Expect = 1e-10 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 111236 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 111295 ||||| || ||||| ||||| | ||| |||||| || ||||| | ||| || Sbjct 341566 GCGATGGAGGCCAAGTTGCATATAGCGACCTCATCGAGCGAGGTATACTCGATAATCTCC 341507 Query 111296 GTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCAC 111355 || || |||||| || || ||| | | | ||||| |||||||| || ||||||| Sbjct 341506 GTGCACAAGTTGCTGCTTTTGATCATGCTAAGATTCTGCTGGTTACTTTTTCTGTTGCAA 341447 Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAT 111400 || ||||||||||| ||||| | || ||||||| |||| ||| Sbjct 341446 GCGTCCTTGTAGAGTATGTATAGAGTGTTCGTCTCCATCTGGGAT 341402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627840505192800