Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq74 114 2e-20 seq160 82.4 9e-11 >seq74 Length=1577532 Score = 114 bits (126), Expect = 2e-20 Identities = 802/1267 (63%), Gaps = 52/1267 (4%) Strand=Plus/Minus Query 117842 GTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTT 117901 |||||||||||| |||||||| |||| ||||| |||| | ||||| || |||| | Sbjct 1093389 GTAGTACATCCCAGTCTTGAGACCCTTTTTCCACCCATAGAAGTGCATCGAAGACAGCGC 1093330 Query 117902 GGAGAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 117961 | || | | ||||| || |||| || ||| |||||||||||| || Sbjct 1093329 TCCGTACGTAGCTTTCTCCATATGGATATTCAAGCTCTGGCTCTGATCGATGAAGGCCCC 1093270 Query 117962 CCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAG 118021 | |||||||||||| | || | | ||||| | || |||||||| ||| |||| | Sbjct 1093269 TCTATCCGCCGCCATGTTGATAATAACCTTCTGCGAAATCTCCCACACGGTCTTGTAAAT 1093210 Query 118022 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCC-TTGACCA 118080 || | | ||| || || | ||| |||||||| || |||| ||| | | Sbjct 1093209 AGCTTTGAGGTTATCCGGAATGCCGGGGATGTTTTGGATAGA----CCCGAAGTTGGCGA 1093154 Query 118081 TGA---GATCCTTCAT---ATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 118134 || | | |||||| ||| | || || || ||| || ||||| | | | Sbjct 1093153 GGACTTGGTTCTTCATGGTATCGTCCCACAAG-GAGGCATCCGTT--AGATCATTGATCA 1093097 Query 118135 GATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCG 118194 | || | |||||||| ||||| || | ||| | || |||||||| | | Sbjct 1093096 GGTGTTGGTTGACAACCTGGAACTCCCCAGAAAGGACCCTCCTGGTGTAGATATTCGAGG 1093037 Query 118195 TGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGG 118254 |||| ||||| | | |||| ||||| |||| |||||| || || || || || ||||||| Sbjct 1093036 TGTAAGGCTCGATGGACTCGTTGTTGCCCAGGATTTGCGCAGTAGACGCAGTAGGCATGG 1092977 Query 118255 GTGCCA-TGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCC 118313 | || | | | |||| || || | || | | || ||||| | ||| | Sbjct 1092976 GAGCGAGTAACAAGGAA-TTGCGTACCCCATGCTTGGCGATTTTCTCCTTCAAAGCAGAC 1092918 Query 118314 CAGTCGTAGTTGAGCTTT----GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTG 118369 ||||| || || || | || | ||| ||||| || |||| | |||||||| Sbjct 1092917 CAGTCCCAGA-GATCTGTCGGAGTAACGCCC---CACATGTCGTACTGCAAGATACCTTT 1092862 Query 118370 GGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCT 118429 | | || || || | ||| ||| ||||| || ||| || | |||| | || Sbjct 1092861 GCTTACAGGACTGCCTTCGTAGGTCGAATAAGGGCCGTCTTTCTCGGCTAGTTCGCAACT 1092802 Query 118430 CGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT---TGCCTTGGC 118486 |||||| ||||| |||| || | ||||| || || | ||||| |||| || Sbjct 1092801 CGCCTCCAGGGCCGCGTAGTAGAGGGTTTCGAAGATTTGCTTATTCAAAAGTGCC---GC 1092745 Query 118487 CTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACC 118546 || ||| ||| || | | || | || || | ||||| | || |||| || Sbjct 1092744 CTGTTCGCTATCGAAGGGCATGCGCATGAGGATGAACGCGTCCGCTAACCCCTGGATCCC 1092685 Query 118547 GAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGGGATAAAA 118603 || || || || || ||||||||||| ||| || || ||| | ||| || | Sbjct 1092684 GATTCCGATGGGCCGGTGTCTCATATTCGACAGCCTCGC---CTCGGGTATGGGGTAGTA 1092628 Query 118604 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 118663 ||| ||||| | | | | || ||| ||| ||||| || ||||| | ||| Sbjct 1092627 GTTCACGTCGATTATTTTGTCCAAGTTCCTGGCGACCACCTTAGTTATTTCTCTCAACTT 1092568 Query 118664 TTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAG 118723 | | |||| | | | || || ||| || | | ||||| || |||| Sbjct 1092567 CTGGAAATCGTATGTCTCACGATCGGGCTTTACAAACATGTTGACAGCGATGGAGGCCAA 1092508 Query 118724 ATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGA 118783 || ||||||| | |||||| || ||||| ||||| |||||||||||||| Sbjct 1092507 GTTGCACACAGCGACCTCATCGGGGGAGGTATACTCGATAATCTCCGTGCACAAGTTGCT 1092448 Query 118784 ACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG--TGTTACACGCATCCTTGTAA 118841 ||||| || ||||| | |||| || || ||||| |||| || ||||||||||| Sbjct 1092447 GCTCTTGATCGTGCCAAGATTCTGCTGGTT--ACTTTTCCTGTTGCAAGCATCCTTGTAG 1092390 Query 118842 AGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG-AATAGCCTTCCAGACATCGGC 118900 |||||||| || || || ||||| ||||| | || || || ||||| || || Sbjct 1092389 AGCATGTAAGGAGTACCAGTCTCTACCTGGGA-TACAGTGATGGCTTTCCACACGTCACG 1092331 Query 118901 AGCTGGCACAGTGGC-GTTG-GCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCA 118958 || || | | || | | | || | || || ||||||| | ||||| ||| Sbjct 1092330 TGCCGGTA-ACTGCCTGACGAACTTG-CCTTCAGCCTCGTAGCGTTCATAGAGCTTCTCA 1092273 Query 118959 AACTCTTCACCCACGGCCTCT-GAGAGCCC--TGGTGCCTTATCTGGGCAGAAGAGAGAC 119015 ||||| || ||| | || | || ||||| ||| || || ||||| | |||||| Sbjct 1092272 AACTCCTCGCCC-CAGCAAATGGAAAGCCCCTTGGAGC--GATGCGGGCACATCAGAGAC 1092216 Query 119016 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 119075 || ||| | |||| |||| ||||||||| | ||| |||||||| | || |||| Sbjct 1092215 CAAGTACCGTCAGCCTCGACCCTCTTCATGAACAAGTCAGGGATCCACATAGCGTAGAAT 1092156 Query 119076 AGATCCC 119082 || |||| Sbjct 1092155 AGTTCCC 1092149 Score = 98.7 bits (108), Expect = 1e-15 Identities = 257/380 (68%), Gaps = 14/380 (4%) Strand=Plus/Minus Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 ||||| || |||| || ||||||| | |||||| || ||||| ||||| ||| Sbjct 1095852 GCGATGGAGGCCAAGTTGCACACAGCGACCTCATCGGGGGAGGTATACTCGATAATCTCC 1095793 Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTG--TGTTAC 118827 ||||||||||| ||||| || ||||| | |||| || || ||||| |||| | Sbjct 1095792 GTGCACAAGTTGCTGCTCTTGATCGTGCCAAGATTCTGCTGGTT--ACTTTTCCTGTTGC 1095735 Query 118828 ACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAG-AATAGCC 118886 | || |||||||| ||||||||||| || || ||||| ||||| | || || || Sbjct 1095734 AAGCGTCCTTGTAGAGCATGTATGGAGTACCAGTCTCTACCTGGGA-TACAGTGATGGCT 1095676 Query 118887 TTCCAGACATCGGCAGCTGGCACAGTGGC-GTTG-GCTCGCCCCTCTTCCTCGTACTTTG 118944 ||||| || || || || | | || | | | || | || || ||||||| | Sbjct 1095675 TTCCACACGTCACGTGCCGGTA-ACTGCCTGACGAACTTG-CCTTCAGCCTCGTAGCGTT 1095618 Query 118945 TGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCC--TGGTGCCTTATCTGG 119002 ||||| |||||||| || ||| | || || ||||| ||| || || || Sbjct 1095617 CATAGAGCTTCTCAAACTCCTCGCCCCAGCAATCGGAAAGCCCCTTGGAGC--GATGCGG 1095560 Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062 ||| | |||||||| ||| | |||| |||| ||||||||| | ||| |||||||| Sbjct 1095559 GCACATCAGAGACCAAGTACCGTCAGCCTCGACCCTCTTCATGAACAAGTCAGGGATCCA 1095500 Query 119063 GAGCGCCGAGAAGAGATCCC 119082 | || |||| || |||| Sbjct 1095499 CATAGCGTAGAATAGTTCCC 1095480 >seq160 Length=904994 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 |||||| || || | ||| || || | ||| || | |||||| ||||| | ||| Sbjct 788820 GGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAGAAAGTTAAACC 788879 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGC-ACAAAATGAGCCAGAGAAGAAGA 130133 |||||| | ||| ||||||||||||||||| || || ||||| | |||||||| || | Sbjct 788880 TGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTA-CCAGAGAAAAATA 788938 Query 130134 TCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATC-A 130192 |||| || || ||||| || | | || ||||| || | | | | |||| | | Sbjct 788939 TCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGTG-GAGCTTTTGGAGCTT 788997 Query 130193 AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGG 130233 | ||| || | ||||| | |||||||||| | | ||| || Sbjct 788998 ATCCAATTGAGGGCCCAATTCGCCTTTTTCGCTACACAAGG 789038 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618246631377080