Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq643 145 6e-30 >seq643 Length=490110 Score = 145 bits (160), Expect = 6e-30 Identities = 434/656 (66%), Gaps = 24/656 (4%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 ||||| | |||||| ||||| ||||| || | | |||||||||||| ||||| ||||| Sbjct 177003 CCAGTAACGTGTGCTATCATATATGTTAGCAAAGCGTAACTAGCAATATTAAAAGGCACT 176944 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 || || ||||||||| | |||| |||||| || |||||||| |||| || | | ||| Sbjct 176943 CCAAGTCCCATATCTGCAGATCGTTGATAAAGTTGACATGAAAGTTCATCATTTCCTACA 176884 Query 111898 TAAAA-TTGACAAAGTACATGACAAGGAGGCAATGCCATCCC----AT-TCATAAAGGGT 111951 |||| | ||| || | ||| |||||||| |||||||| | || ||| | ||||| Sbjct 176883 AAAAACTGGACCAAACA-ATGGCAAGGAGGTAATGCCATTTCTGGGATATCA-ATAGGGT 176826 Query 111952 CCCCATGCACACATGATCATCCTTCT-GCTGTAGCGATTATGTTCAATGTCGTGTATGAC 112010 |||||||||||| || || | ||| | ||| || | || | || | ||| || Sbjct 176825 -TCCATGCACACATTATGATGCGTCTATCATTAGGTCTTGTTTTTATAGT-ATTTATTAC 176768 Query 112011 ATTCAAGAGCTGGTCTATCCCTTTACCAGTATAATCCGCCTGACAT-CCAGTGTATGTTG 112069 || | |||||| || |||||| |||| || || || ||| || |||| | Sbjct 176767 ATGAGCTAACTGGTCAATTCCTTTATTTTTATAGTCTGCATG-CATACCTTTGTACTCAG 176709 Query 112070 CCCCATAGTGTCTCCATTGGAATCCATAAATAGGCCCCAGATCTCCCGGGGCTGTATCT- 112128 | ||| | ||||||||||| || ||||| || || || | ||| || || ||||| Sbjct 176708 CTCCAAAATGTCTCCATTGAAAACCATATATCGGACCTAAATCACCTTCTTCTCTATCTT 176649 Query 112129 ---GGAAATTGCTCTCTATTCAACAAATCACTTCTAATATGAGGATTCCAAATCTTCACT 112185 || | | ||| || || | ||| || ||| | | |||||| | ||| Sbjct 176648 TTAGGCCAACGGAGTCT----AAGAACTGTCTTGTACTATTTGCGTCCCAAATATGAACT 176593 Query 112186 CCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAACCATAGCAATTCTTCC 112245 |||| || || ||||| || ||||||||||||||| || | ||||| Sbjct 176592 TTTTTATCGCTTAGTTCAAAGGCATTCGTACTTCCTCTAATAAACCAGAGTAGCTCTTCG 176533 Query 112246 ACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGAAAAGAATCAT---GTAGG 112302 ||||| ||| |||| | || ||||| || |||| | ||||| |||| ||| | Sbjct 176532 ACAACGCCTCTCCAAAATACCCTTTTCGTTGTTAATAAAGGAAATATTTCATTTCGTAAG 176473 Query 112303 GAGAATCTTAGTTGTGGACCAAACAAAGACAATGTTCCTACTCCAGTTCTATCGGGTCTC 112362 | | | ||| | |||||| | || || || |||||||| || | || || Sbjct 176472 CTATAACGCATTTGAGCACCAAATATCGAAAAAGTACCTACTCCTGTGCGGTCACTTCGT 176413 Query 112363 CTATCCCCTTTATCCAAAATCTGCTTAACAAGAGATAGGTATTGCAATTCTTCATG 112418 || |||| || || | || | || | || || ||||| ||||||||||| Sbjct 176412 TTAACCCCCTTTTCTATTATATTTTTTATGTGATTCAGATATTGAAATTCTTCATG 176357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391829078615059