Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq74 113 5e-20 seq56 87.8 2e-12 >seq74 Length=1577532 Score = 113 bits (124), Expect = 5e-20 Identities = 326/489 (67%), Gaps = 16/489 (3%) Strand=Plus/Plus Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 || |||| |||| ||| | || | || |||||||| ||||| |||||||| | |||| Sbjct 1091978 CCAATGGGCTCGTCCCTCTACTGAGGGTGTTCAACAATACGGCGAGGTACGTCGATCAGG 1092037 Query 53547 GTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 | || ||| | ||| |||| || || ||||| ||||||||||| || |||||| Sbjct 1092038 GAGGCAACAAGAGACCTGGGGCGTTTGCTATTTACCTAGAGCCGTGGCATGCGGACATTT 1092097 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT---GCGCTGCCGTGACC 53663 ||||||| ||||| ||| ||| || | || |||| || ||| | | || | Sbjct 1092098 TGGAGTTCCTCGACCTGAAGAAGAA-CACCGGGA--AAGATATTAATCGCGCCAGGGAAC 1092154 Query 53664 TGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAG 53722 | || ||| ||| ||||||| || ||| | |||||| | | ||| ||| |||| Sbjct 1092155 TATTCTAC-GCTATGTGGATCCCTGACTTGTTCATGAAGAGGGTCGAGGCTGACGGTACT 1092213 Query 53723 TGGTACCTGATGTGCCCGAACGAGTGCCCCGGCC--TCCAGGGTGTCTACGGTGAGGAGT 53780 |||| |||||||||||| | | | || | |||| | || || ||||||| Sbjct 1092214 TGGTCTCTGATGTGCCCGCATCGCTCCAAGGGGCTTTCCA--TTTGCTGGGGCGAGGAGT 1092271 Query 53781 TTAACGAGATGTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCG 53839 || | || | ||| | ||| |||| | | | ||| | | | | || | ||| Sbjct 1092272 TTGAGAAGCTCTAT-GAACGCTACGAGGCTGAAGGCAAGTTCGTCAGGCAGTTACCGGCA 1092330 Query 53840 CGTGAGGTATGGGATGCAATC-CTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTG 53898 ||||| || ||| | || ||| || | |||||| ||||| || || || |||||| Sbjct 1092331 CGTGACGTGTGGAAAGCCATCACTGTA-TCCCAGGTAGAGACTGGTACTCCTTACATGCT 1092389 Query 53899 CTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAG 53958 |||||||||| | |||| ||| || |||||| |||| | ||| ||||| || Sbjct 1092390 CTACAAGGATGCTTGCAACAGGAAAAGTAACCAGCAGAATCTTGGCACGATCAAGAGCAG 1092449 Query 53959 CAACTTATG 53967 |||||| || Sbjct 1092450 CAACTTGTG 1092458 Score = 111 bits (122), Expect = 2e-19 Identities = 327/491 (67%), Gaps = 20/491 (4%) Strand=Plus/Plus Query 53487 CCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGG 53546 || |||| |||| ||| | || | || |||||||| ||||| |||||||| | |||| Sbjct 1095309 CCAATGGGCTCGTCCCTCTACTGAGGGTGTTCAACAATACGGCGAGGTACGTCGATCAGG 1095368 Query 53547 GTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTA 53606 | || ||| | ||| |||| || || ||||| ||||||||||| || |||||| Sbjct 1095369 GAGGCAACAAGAGACCTGGGGCGTTTGCTATTTACCTAGAGCCGTGGCATGCGGACATTT 1095428 Query 53607 TGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGAT---GCGCTGCCGTGACC 53663 ||||||| ||||| ||| ||| || | || |||| || ||| | | || | Sbjct 1095429 TGGAGTTCCTCGACCTGAAGAAGAA-CACCGGGA--AAGATATTAATCGCGCCAGGGAAC 1095485 Query 53664 TGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAG 53722 | || ||| ||| ||||||| || ||| | |||||| | | ||| ||| |||| Sbjct 1095486 TATTCTAC-GCTATGTGGATCCCTGACTTGTTCATGAAGAGGGTCGAGGCTGACGGTACT 1095544 Query 53723 TGGTACCTGATGTGCCCGAACGAGTGCCCC----GGCCTCCAGGGTGTCTACGGTGAGGA 53778 |||| |||||||||||| | || || ||| | | | || || || ||||| Sbjct 1095545 TGGTCTCTGATGTGCCCG---CATCGCTCCAAGGGGCTTTCCGATTG-CTGGGGCGAGGA 1095600 Query 53779 GTTTAACGAGATGTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGG 53837 |||| | || | ||| | ||| |||| | | | ||| | | | | || | || Sbjct 1095601 GTTTGAGAAGCTCTAT-GAACGCTACGAGGCTGAAGGCAAGTTCGTCAGGCAGTTACCGG 1095659 Query 53838 CGCGTGAGGTATGGGATGCAATC-CTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATG 53896 | ||||| || ||| | || ||| || | |||||| ||||| || || || |||||| Sbjct 1095660 CACGTGACGTGTGGAAAGCCATCACTGTA-TCCCAGGTAGAGACTGGTACTCCATACATG 1095718 Query 53897 TGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 ||||||||| | |||| ||| || |||||| |||| | ||| ||||| Sbjct 1095719 CTCTACAAGGACGCTTGCAACAGGAAAAGTAACCAGCAGAATCTTGGCACGATCAAGAGC 1095778 Query 53957 AGCAACTTATG 53967 |||||||| || Sbjct 1095779 AGCAACTTGTG 1095789 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGT 55786 ||||| | |||||| ||| |||||||||||| | |||||| | | || ||||| Sbjct 1093201 CTCAAAGCTATTTACAAGACCGTGTGGGAGATTTCGCAGAAGGTTATTATCAACATGGCG 1093260 Query 55787 GCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCT 55846 || ||| | || || | |||||| ||| |||| |||| ||| |||||||| || Sbjct 1093261 GCGGATAGAGGGGCCTTCATCGATCAGAGCCAGAGCTTGAATATCCATATGGAGAAAGCT 1093320 Query 55847 TC--ACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | || | | | || ||||||||||| || |||||||| ||||| |||||||| | Sbjct 1093321 ACGTACGGAGC--GCTGTCTTCGATGCACTTCTATGGGTGGAAAAAGGGTCTCAAGACTG 1093378 Query 55905 GTATGTACTA 55914 | |||||||| Sbjct 1093379 GGATGTACTA 1093388 >seq56 Length=1575893 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| || | | ||||||| ||||| || || | ||||| ||||||||||| Sbjct 1342556 AGTGAAAATATACCTTGGACTTGCAGAGTCCTTTCCCCCTGTCAGACGAGTACCGAATTG 1342615 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCA 117416 || ||||| ||||||||||| | || ||| ||| ||| ||||||| |||| Sbjct 1342616 ACCTCTCGGTTCCAAGAGGTTGATATTATTGCTGCCGACATAGTTTTGGGCCA 1342668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547049147001400