Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq318 127 1e-24 seq805 104 1e-17 seq253 87.8 1e-12 >seq318 Length=663677 Score = 127 bits (140), Expect = 1e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| ||| || |||||||||||||||||||| | ||||| Sbjct 605677 AGACGAAGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGACAAGGTTCGG 605618 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| || ||||| || || | |||||||| || || | ||| ||| Sbjct 605617 CCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCC 605558 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||| || | |||||| | || ||||| || || || | ||| Sbjct 605557 TTATCTTGGATC-TTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGT 605499 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || |||||||| || | |||||||||||| |||||||| Sbjct 605498 GATAGTTTTACCAGTCAGCGTTTTCACAAAGATCTGCAT 605460 Score = 118 bits (130), Expect = 7e-22 Identities = 170/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 34471 CAATCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTA 34530 |||| | ||| ||||| ||||| | |||||||| || || || || ||||||||| Sbjct 606379 CAATATTTGCCTCCTCTGAGACGAAGAACCAAATGAAGCGTAGATTCTTTCTGAATGTTA 606320 Query 34531 TAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGG 34590 |||||||| | ||||| | ||||| |||||||| || || || || || | |||||| Sbjct 606319 TAATCTGACAAGGTTCGGCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGG 606260 Query 34591 TCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTC 34649 || || || | ||||| |||||| ||| ||| | ||| ||| | || ||||| Sbjct 606259 TCTGGGGGAATGCCCTCTTTGTCTTGGAT-TTTAGCTTTCACGTTCTCGATGGTGTCGGA 606201 Query 34650 GCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||||| ||| || || || || |||| ||||| ||||| |||||||| Sbjct 606200 TGGTTCAACTTCCAAGGTAATTGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 606144 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || || || ||||||||||||||||| | ||||| Sbjct 606133 AGACGAAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGATAAGGTTCGG 606074 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| || ||||| || || | |||||||| || || | ||||| Sbjct 606073 CCATCTTCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCT 606014 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| ||| | || ||||| || ||||| | || Sbjct 606013 TTGTCTTGGAT-TTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGT 605955 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || || ||||| ||||| ||||| |||||||| Sbjct 605954 TATGGTCTTTCCAGTTAAAGTTTTGACAAAGATCTGCAT 605916 Score = 95.1 bits (104), Expect = 8e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || || || || || |||||||||||||| || | |||| Sbjct 605905 AGACGGAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGACAAGGTTCTG 605846 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| || || || || || | |||||||| || || | ||| ||| Sbjct 605845 CCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCC 605786 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| ||| ||| | ||| || | || ||||| |||||||||| ||| Sbjct 605785 TTGTC-CTGAATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCACTTCCAAGGT 605727 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || |||| ||||| ||||| |||||||| Sbjct 605726 AATGGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 605688 >seq805 Length=567825 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| || ||||| ||||| ||| || | |||||||||||| |||| | ||||| Sbjct 473807 AGACGAAAAACCAAGTGGAGTGTGGATTCTCTCTGAATGTTATAAGCTGACAAGGTTCGG 473748 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| |||||||| || || || || || | |||||||| ||||| | ||||| Sbjct 473747 CCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGCGGAATGCCCTCT 473688 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | ||| ||| | || ||||| || ||||| | || Sbjct 473687 TTGTCTTGGAT-TTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGT 473629 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || || || ||| | ||||| ||||| || ||||| Sbjct 473628 TATGGTCTTTCCAGTTGAAGTTTTGACAAATATTTGCAT 473590 >seq253 Length=804807 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 ||||| || | || ||||| |||||||| || || || || || | || || | Sbjct 281380 CGCAATACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCCA 281439 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 ||||| | ||||||||| ||||| |||||||||||||| || || || | |||||||||| Sbjct 281440 TCTTCCAATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATTCCCTCCTTG 281499 Query 34612 TCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 | | ||| || | ||||| | || || || || || || | || || Sbjct 281500 T-TTTGAATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTGAT 281558 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || ||||| || || ||||| ||||| |||||||| ||| Sbjct 281559 GGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCATCTTG 281598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314636034135569