Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq318 145 7e-30 seq253 134 1e-26 seq805 122 8e-23 seq12025 93.3 4e-14 seq199 89.7 4e-13 >seq318 Length=663677 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| || || ||| | ||||| | ||||||||||| ||| Sbjct 605688 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACCATTACCTTGGAAGTGGAACCATCC 605747 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| |||||||| ||||| ||||| || || || || ||| Sbjct 605748 GACACCATCGAGAATGTAAAAGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCAA 605807 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||| || |||||| ||||||| | ||| | || ||||| ||| Sbjct 605808 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCAGAACCTTGTCTGATTATAAC 605867 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || | || |||||| | ||| | || ||||| || Sbjct 605868 ATTCAGAAAGAATCTACACTTCACTTGGTTCTCCGTCTCCGTGGTGGAAT 605917 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||||| || || ||| | ||||| | ||||| ||||| ||| Sbjct 606144 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACAATTACCTTGGAAGTTGAACCATCC 606203 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||||| ||||||||||| ||||| || || || ||| Sbjct 606204 GACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCAA 606263 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||| || |||||| ||||||| | ||| | || ||||| ||| Sbjct 606264 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGATTATAAC 606323 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 ||||| || || || || | ||||||||| | ||| | | || |||| Sbjct 606324 ATTCAGAAAGAATCTACGCTTCATTTGGTTCTTCGTCTCAGAGGAGGCA 606372 Score = 129 bits (142), Expect = 5e-25 Identities = 179/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 26967 AAATTTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATT 27026 |||||||| | || | | |||||||| ||||| ||||| ||||| || || |||| Sbjct 605439 AAATTTTTCATTTGTTTCAGAATGCAGATCTTTGTGAAAACGCTGACTGGTAAAACTATC 605498 Query 27027 ACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAA 27086 || ||||| || ||||| || ||| | || |||| || ||| || || ||||| || Sbjct 605499 ACCCTTGAGGTTGAACCATCTGACACCATCGAGAATGTTAAAGCCAAGATCCAAGATAAG 605558 Query 27087 GAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGT 27146 ||||| || || || || ||||| | || || | || || |||||| ||||||| | Sbjct 605559 GAAGGAATTCCCCCAGACCAACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGC 605618 Query 27147 TCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTG 27206 ||| | || ||||| ||||||||||| || || || | || |||||| | ||| | Sbjct 605619 CGAACCTTGTCAGATTATAACATTCAAAAAGAATCCACACTCCACTTGGTTCTTCGTCTC 605678 Query 27207 CGGGGTGGCAT 27217 || ||||| || Sbjct 605679 CGTGGTGGTAT 605689 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| | || || ||| | || || | ||||| ||||| || Sbjct 605916 ATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACGTTAGAAGTTGAACCATCT 605975 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||||| ||||||||||| ||||| || || || ||| Sbjct 605976 GACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCAA 606035 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || || |||||| ||||||| | ||| | || ||||| ||| Sbjct 606036 CAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTATCAGATTATAAC 606095 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || | || |||||| | ||| | || ||||| || Sbjct 606096 ATTCAGAAAGAATCTACACTTCACTTGGTTCTTCGTCTCCGTGGTGGTAT 606145 >seq253 Length=804807 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || ||| | || |||||||| || ||||| || Sbjct 281594 ATGCAGATCTTTGTTAAAACTTTGACTGGTAAGACCATCACTCTTGAGGTCGAACCTTCG 281535 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || |||||| |||| || || || ||||| |||||| Sbjct 281534 GATACCATCGAAAATGTTAAGGCTAAGATTCAAAACAAGGAGGGAATTCCACCAGATCAA 281475 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||||||||| | || || |||||||||||||| | || | || || ||||| Sbjct 281474 CAGCGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGACGTACTTTGTCGGACTACAAT 281415 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || | || | || ||||| ||| |||| || Sbjct 281414 ATACAAAAGGAATCTACTCTTCACCTTGTATTGCGATTGAGGGGAGG 281368 >seq805 Length=567825 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| |||||| || || ||| | || || | ||||| ||||| || Sbjct 473590 ATGCAAATATTTGTCAAAACTTCAACTGGAAAGACCATAACGTTAGAAGTTGAACCATCT 473649 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||||| ||||||||||| ||||| || || || ||| Sbjct 473650 GACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCGCCAGACCAA 473709 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||| || |||||| ||||||| | ||| | || | ||| ||| Sbjct 473710 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGCTTATAAC 473769 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | || || || | || |||||||| ||| | || ||||| || Sbjct 473770 ATTCAGAGAGAATCCACACTCCACTTGGTTTTTCGTCTCCGTGGTGGTAT 473819 >seq12025 Length=7061 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || ||| | || |||||||| || |||| || Sbjct 4227 ATGCAGATCTTTGTTAAAACTTTGACTGGTAAGACCATCACTCTTGAGGTCGAACTTTCG 4286 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || ||||||||||| || | || ||||| |||||| Sbjct 4287 GATACCATCGAAAATGTTAAGGCTAAGATTCAAGACAAGGAGAGAATTCCACCAGATCAA 4346 Query 27108 CAGCGTTTAAT 27118 ||||||||||| Sbjct 4347 CAGCGTTTAAT 4357 >seq199 Length=980398 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/223 (69%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| |||||| |||| || ||| | || |||||||| || | | | || Sbjct 850176 ATGCAGATCTTTGTTAAAACTTTGACTGGTAAGACCATCACTCTTGAGGTCGGATCTTCG 850235 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || || || | || || || ||||||||||| || || || ||||| || ||| Sbjct 850236 GATATCATCGAAAATGTTAAGGCTAAGATTCAAGACAAGGAGGGAATTCCACCAGACCAA 850295 Query 27108 CAGCGTTTA--------ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCG 27159 ||| ||||| || | || || |||||||||||||| | || | || | Sbjct 850296 CAGTGTTTAATTTTTGCATTTTTGCTGGTAAACAATTGGAAGATGGACGTACTTTGTCGG 850355 Query 27160 ATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 | ||||| || |||||||| || || | || | || ||||| Sbjct 850356 ACTACAATATACAAAAGGAATCCACTCTTCACCTTGTATTGCG 850398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434785787943360