Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq643 96.9 3e-15 >seq643 Length=490110 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582 ||| |||| ||| | ||| | ||||| || |||||||| | ||| |||| ||||| Sbjct 176792 CCTAATGATAGACGCATCATAATGTGTGCATGGAACCCTATTGATATCCCAGAAATGGCA 176851 Query 34583 CTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAG 34642 | || || ||||| | ||| || | || | |||| || || || || || Sbjct 176852 TTACCTCCTTGCCATTGTTTGGTCCAGTTTTTTGTAGGAAATGATGAACTTTCATGTCAA 176911 Query 34643 CTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCT 34702 || ||||||||||| | ||| ||||| | || ||||| || || ||||||||||||||| Sbjct 176912 CTTTATCAACGATCTGCAGATATGGGACTTGGAGTGCCTTTTAATATTGCTAGTTACGCT 176971 Query 34703 CTGCTCACGTACATGATCGCTCATGT 34728 |||| || || ||||| || || || Sbjct 176972 TTGCTAACATATATGATAGCACACGT 176997 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || || || ||||| || || |||| ||||||||||||||| || || ||||| || | Sbjct 176997 ACGTGTGCTATCATATATGTTAGCAAAGCGTAACTAGCAATATTAAAAGGCACTCCAAGT 176938 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| ||| | ||||||||||| || || || || || || |||| | || | || Sbjct 176937 CCCATATCTGCAGATCGTTGATAAAGTTGACATGAAAGTTCATCATTTCCTACAAAAAAC 176878 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 ||| | ||||| || || | ||||| |||| ||| | |||||||| || Sbjct 176877 TGGACCAAACAATGGCAAGGAGGTAATGCCATTTCTGGGATATCAATAGGGTTCCATGCA 176818 Query 6797 CACATCACGATCCTTCTGTCATCAGG 6822 ||||| | ||| | ||| |||| ||| Sbjct 176817 CACATTATGATGCGTCTATCATTAGG 176792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448125719190960