Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq318 163 7e-35 seq792 159 8e-34 seq805 134 3e-26 seq253 134 3e-26 seq199 120 7e-22 seq12025 87.8 4e-12 >seq318 Length=663677 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||| |||||||| ||||||||||| | | ||| | |||||| Sbjct 605671 AGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGACAAGGTTCGGCCATCT 605612 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| || || || || ||||| | | ||||||||| || |||| ||||||||| || Sbjct 605611 TCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTATCT 605552 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || |||||||||||||| ||||||||| || ||||| || Sbjct 605551 TGGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGTGATAGTT 605492 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || || ||||| | ||||||| Sbjct 605491 TTACCAGTCAGCGTTTTCACAAAGATCTGCATT 605459 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || || ||||| || ||||||||||| | | ||| || |||||| Sbjct 605899 AGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGACAAGGTTCTGCCATCT 605840 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| || || || |||||||| | | ||||||||| || |||| ||||||||||||| Sbjct 605839 TCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCC 605780 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || || || ||| || || ||||||||||| || ||| || || | || || ||| Sbjct 605779 TGAATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCACTTCCAAGGTAATGGTC 605720 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || ||||| | |||||| Sbjct 605719 TTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 605688 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || || ||||| || ||||||||||| | | ||| | |||||| Sbjct 606127 AGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGATAAGGTTCGGCCATCT 606068 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| || || || || ||||| | | ||||||||| || |||| || || ||||| Sbjct 606067 TCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCT 606008 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||||||||| |||||||||||||| |||||| || | || || ||| Sbjct 606007 TGGATTTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTC 605948 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||||| || | ||| || ||||| | ||||||| Sbjct 605947 TTTCCAGTTAAAGTTTTGACAAAGATCTGCATT 605915 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| || || ||||| || ||||||||||| | | ||| | ||||||||||| || Sbjct 606346 TGAAGCGTAGATTCTTTCTGAATGTTATAATCTGACAAGGTTCGGCCATCTTCCAGTTGT 606287 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| | | ||||||||| || |||| || || ||||| ||||| || Sbjct 606286 TTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCTTGGATTTTA 606227 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||||||||| ||||||||||| || |||||| || | || || |||||||| || Sbjct 606226 GCTTTCACGTTCTCGATGGTGTCGGATGGTTCAACTTCCAAGGTAATTGTCTTTCCAGTT 606167 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| | |||||| Sbjct 606166 AGAGTTTTGACAAAGATCTGCAT 606144 >seq792 Length=424820 Score = 159 bits (176), Expect = 8e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| ||||| || || || |||||||| || || || || || || | ||| || | || Sbjct 97141 TCTGAGGACGAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGAAAGAGTTCGACC 97082 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||| ||||| || || |||||||| | | ||| || || || || | |||||||| Sbjct 97081 ATCTTCGAGCTGTTTTCCAGCGAAGATCAATCTTTGCTGATCTGGGGGGATCCCTTCCTT 97022 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| |||||||| || ||||||||||||||||||||| ||| |||||||| ||||| Sbjct 97021 GTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCAGAGGGTTCGACCTCGAGGGTGAT 96962 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || || || || | ||||| Sbjct 96961 GGTCTTACCCGTGAGTGTTTTAACGAAAATTTGCAT 96926 >seq805 Length=567825 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210911 GTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTG 210970 ||| || ||||| ||| | || ||||||||| | | | ||| | ||||||||||| || Sbjct 473793 GTGGAGTGTGGATTCTCTCTGAATGTTATAAGCTGACAAGGTTCGGCCATCTTCCAGTTG 473734 Query 210971 CTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 || || |||||||| | | ||||||||| || |||| || || ||||| ||||| || Sbjct 473733 TTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGCGGAATGCCCTCTTTGTCTTGGATTTT 473674 Query 211031 TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 ||||||||| |||||||||||||| |||||| || | || || |||||||| || Sbjct 473673 AGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTCTTTCCAGT 473614 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 ||| || ||||| | ||||| Sbjct 473613 TGAAGTTTTGACAAATATTTGCAT 473590 >seq253 Length=804807 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 |||||||||||||| || || ||||| || || || |||| | || | |||||||||| Sbjct 281386 ACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCCATCTTCC 281445 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | || || || || || || | || ||||| || || |||| ||| ||||||| || Sbjct 281446 AATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATTCCCTCCTTGTTTTGA 281505 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| || || ||||||||||| || || ||| ||||| |||||||| ||||| Sbjct 281506 ATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTA 281565 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || | ||| || ||||| | |||||| || Sbjct 281566 CCAGTCAAAGTTTTAACAAAGATCTGCATCTT 281597 >seq199 Length=980398 Score = 120 bits (132), Expect = 7e-22 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 ||||||||||||||||| || ||||| || || || |||| | || | |||||||||| Sbjct 850392 ACAAGGTGAAGAGTGGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCCATCTTCC 850333 Query 210966 AGCTGCTTGCC--------TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCT 211017 | || || || ||| || || | | |||||||| || |||| ||| |||| Sbjct 850332 AATTGTTTACCAGCAAAAATGCAAAAATTAAACACTGTTGGTCTGGTGGAATTCCCTCCT 850273 Query 211018 TGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGA 211077 |||| || ||||| || || ||||||||| | || || | | ||||| ||||||| Sbjct 850272 TGTCTTGAATCTTAGCCTTAACATTTTCGATGATATCCGAAGATCCGACCTCAAGAGTGA 850213 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | ||||| || || | ||| || ||||| | |||||| || Sbjct 850212 TGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCATCTT 850173 >seq12025 Length=7061 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 210977 TGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTT 211036 ||| || || | || ||||| || || |||| || |||||||| || ||||| || Sbjct 4364 TGCAAAAATTAAACGCTGTTGATCTGGTGGAATTCTCTCCTTGTCTTGAATCTTAGCCTT 4305 Query 211037 CACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGT 211096 || ||||||||||| || || ||| ||||| |||||||| ||||| || || | ||| Sbjct 4304 AACATTTTCGATGGTATCCGAAAGTTCGACCTCAAGAGTGATGGTCTTACCAGTCAAAGT 4245 Query 211097 CTTTACAAACACCTGCATTTT 211117 || ||||| | |||||| || Sbjct 4244 TTTAACAAAGATCTGCATCTT 4224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158789724067445