Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq253 113 3e-20 seq318 109 4e-19 seq792 104 2e-17 >seq253 Length=804807 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23595 CAATTAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCT 23654 ||| ||| | | || |||||||| || |||||||| | || || || || |||||||| Sbjct 281610 CAACTAACTTCCCAAGATGCAGATCTTTGTTAAAACTTTGACTGGTAAGACCATCACTCT 281551 Query 23655 CGAAGTTGACTCCACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAG 23713 || || || | |||| || | |||| | |||| | || | || |||| || | Sbjct 281550 TGAGGTCGAACCTTCGGATACCATCGAAAATGTTAAGGCTAAGA-TTCAAAACAAGGAGG 281492 Query 23714 GTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA 23773 | | || |||||||||||||||||||| ||||| || |||||| ||||||| | ||| | Sbjct 281491 GAATTCCACCAGATCAACAGCGTTTAATTTTTGCTGGTAAACAATTGGAAGATGGACGTA 281432 Query 23774 CTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 |||| || ||||| |||||||| || || || Sbjct 281431 CTTTGTCGGACTACAATATACAAAAGGAATCTAC 281398 >seq318 Length=663677 Score = 109 bits (120), Expect = 4e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || ||||| || || || ||||| ||||| || || ||||| | | Sbjct 605459 AATGCAGATCTTTGTGAAAACGCTGACTGGTAAAACTATCACCCTTGAGGTTGAACCATC 605518 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| ||||| | || | | || || ||||| | || ||||| | Sbjct 605519 TGACACCATCGAGAATGTTAAAGCCAAGA-TCCAAGATAAGGAAGGAATTCCCCCAGACC 605577 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 |||| | || || ||||| || |||||||||||||| | || || || ||||| | Sbjct 605578 AACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGATTATA 605637 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| |||||||| |||||| | || || ||| Sbjct 605638 ACATTCAAAAAGAATCCACACTCCACTTGGTT 605669 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || ||||| | || ||||| || || || | |||||||| | | Sbjct 605915 AATGCAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACGTTAGAAGTTGAACCATC 605974 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | ||| ||||| |||||||| || | || ||||| || Sbjct 605975 TGACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCA 606034 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || |||||||||||||| | || || ||| ||||| || Sbjct 606035 ACAAAGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTATCAGATTATAA 606094 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || ||||| || ||| | || || ||| Sbjct 606095 CATTCAGAAAGAATCTACACTTCACTTGGTT 606125 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || ||||| || || || | ||||| || | | Sbjct 605688 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACCATTACCTTGGAAGTGGAACCATCC 605747 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | ||||| |||||| ||||| ||||| | || ||||| ||| Sbjct 605748 GACACCATCGAGAATGTAAAAGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCAA 605807 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || || || || |||||||||||||| | | || || ||||| ||| Sbjct 605808 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCAGAACCTTGTCTGATTATAAC 605867 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||| || ||| | || || ||| Sbjct 605868 ATTCAGAAAGAATCTACACTTCACTTGGTT 605897 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| || || ||||| || || || | |||||||| | | Sbjct 606144 ATGCAGATCTTTGTCAAAACTCTAACTGGAAAGACAATTACCTTGGAAGTTGAACCATCC 606203 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||||| |||||||| || | || ||||| ||| Sbjct 606204 GACACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCAA 606263 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || || || || |||||||||||||| | || || || ||||| ||| Sbjct 606264 CAAAGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAACCTTGTCAGATTATAAC 606323 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTT 23820 || || ||||| || || | ||||| ||| Sbjct 606324 ATTCAGAAAGAATCTACGCTTCATTTGGTT 606353 >seq792 Length=424820 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||||||||| |||||||| || || ||||| ||||| || || || | Sbjct 96926 ATGCAAATTTTCGTTAAAACACTCACGGGTAAGACCATCACCCTCGAGGTCGAACCCTCT 96985 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | || || || ||||| ||||| | || |||||||| Sbjct 96986 GACACCATCGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGGATCCCCCCAGATCAG 97045 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || || || || ||||| || ||||| | || ||| | ||| ||||| Sbjct 97046 CAAAGATTGATCTTCGCTGGAAAACAGCTCGAAGATGGTCGAACTCTTTCCGACTACAAT 97105 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || |||||||| | ||| | || | || ||| | ||||| Sbjct 97106 ATTCAGAAGGAGTCCACCCTCCATCTCGTCCTCAGATTGAGGGGAGG 97152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337909113231644