Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq792 165 2e-35 seq805 150 4e-31 seq318 145 2e-29 seq253 140 8e-28 seq199 125 2e-23 seq23314 120 7e-22 seq261 91.5 4e-13 seq515 86.0 1e-11 seq1515 84.2 5e-11 seq993 84.2 5e-11 >seq792 Length=424820 Score = 165 bits (182), Expect = 2e-35 Identities = 166/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| || ||||| ||||| || || || | |||||| |||| | ||||| || Sbjct 97141 TCTGAGGACGAGATGGAGGGTGGACTCCTTCTGAATATTGTAGTCGGAAAGAGTTCGACC 97082 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| ||||| || ||||||||||| | || ||| || || || || || |||||||| Sbjct 97081 ATCTTCGAGCTGTTTTCCAGCGAAGATCAATCTTTGCTGATCTGGGGGGATCCCTTCCTT 97022 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| || |||||||||||| |||| ||| || || | ||||| Sbjct 97021 GTCTTGGATCTTAGCCTTGACGTTTTCGATGGTGTCAGAGGGTTCGACCTCGAGGGTGAT 96962 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| | ||||| | ||| | |||||| Sbjct 96961 GGTCTTACCCGTGAGTGTTTTAACGAAAATTTGCAT 96926 >seq805 Length=567825 Score = 150 bits (166), Expect = 4e-31 Identities = 158/205 (77%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 |||||| ||||||||| | || | || ||| | | ||| |||| |||||||| || || Sbjct 473793 GTGGAGTGTGGATTCTCTCTGAATGTTATAAGCTGACAAGGTTCGGCCATCTTCCAGTTG 473734 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||||||||| | || ||||||||| |||||||| || || ||||||||||| || Sbjct 473733 TTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGCGGAATGCCCTCTTTGTCTTGGAT-TT 473675 Query 225630 TTGCTT-CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 | |||| ||| ||||||||||| || | ||| || |||||||| || ||||| || | Sbjct 473674 TAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGTCTTTCCAG 473615 Query 225689 TCAAAGTTTTTATGAACACTTGCAT 225713 | ||||||| | || | |||||| Sbjct 473614 TTGAAGTTTTGACAAATATTTGCAT 473590 >seq318 Length=663677 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| |||||||||||||| | || ||||| | ||| |||| |||||| Sbjct 605671 AGAACCAAGTGGAGTGTGGATTCTTTTTGAATGTTATAATCTGACAAGGTTCGGCCATCT 605612 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| ||||| | || ||||||||| || ||||| |||||||| ||| Sbjct 605611 TCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTATCT 605552 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || ||| ||||||||||| || | ||| || || | ||||| || Sbjct 605551 TGGATCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGTGATAGTT 605492 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || |||| ||||| | || | |||||| Sbjct 605491 TTACCAGTCAGCGTTTTCACAAAGATCTGCATT 605459 Score = 143 bits (158), Expect = 6e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || |||||||| || | || ||||| | ||| ||||| |||||| Sbjct 605899 AGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGACAAGGTTCTGCCATCT 605840 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||||||||| | || ||||||||| || ||||| ||||||||||| Sbjct 605839 TCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCC 605780 Query 225622 TGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| |||| ||| ||||||||||| || | |||||| || || || || || Sbjct 605779 TGAAT-TTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCACTTCCAAGGTAATGGT 605721 Query 225681 CTTGCCCGTCAAAGTTTT 225698 ||| || || | |||||| Sbjct 605720 CTTTCCAGTTAGAGTTTT 605703 Score = 140 bits (154), Expect = 8e-28 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || |||||||| || | || ||||| | || |||| |||||| Sbjct 606127 AGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCTGATAAGGTTCGGCCATCT 606068 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || ||||| ||||| | || ||||||||| || ||||| || || |||||| Sbjct 606067 TCCAGTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCT 606008 Query 225622 TGGATCTTTTGCTT-CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| |||| ||| ||||||||||| || | ||| || |||||||| || || Sbjct 606007 TGGAT-TTTAGCTTTCACGTTCTCGATGGTGTCAGATGGTTCAACTTCTAACGTTATGGT 605949 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || |||||||| | || | |||||| Sbjct 605948 CTTTCCAGTTAAAGTTTTGACAAAGATCTGCATT 605915 Score = 131 bits (144), Expect = 4e-25 Identities = 144/189 (76%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || || |||||||| || | || ||||| | ||| |||| |||||||| || || Sbjct 606346 TGAAGCGTAGATTCTTTCTGAATGTTATAATCTGACAAGGTTCGGCCATCTTCCAGTTGT 606287 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||||||||| | || ||||||||| || ||||| || || ||||||||||| ||| Sbjct 606286 TTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATGCCCTCTTTGTCTTGGAT-TTT 606228 Query 225631 TGCTT-CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||| ||| ||||||||||| || | ||| || || || || || ||||| || || Sbjct 606227 AGCTTTCACGTTCTCGATGGTGTCGGATGGTTCAACTTCCAAGGTAATTGTCTTTCCAGT 606168 Query 225690 CAAAGTTTT 225698 | |||||| Sbjct 606167 TAGAGTTTT 606159 >seq253 Length=804807 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 |||||||| ||||| ||||| ||||| | |||||| || | |||||| | |||||||| Sbjct 281386 ACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCCATCTTCC 281445 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 | || || ||||| || || | || ||||| || || ||||| || ||||||| ||| Sbjct 281446 AATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATTCCCTCCTTGTTTTGA 281505 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| ||| ||| ||||||||| || || | ||| || || | ||||| ||||| Sbjct 281506 ATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTA 281565 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || ||||||||||| | || | ||||| || Sbjct 281566 CCAGTCAAAGTTTTAACAAAGATCTGCATCTT 281597 >seq199 Length=980398 Score = 125 bits (138), Expect = 2e-23 Identities = 160/220 (73%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 |||||||| ||||||||||| ||||| | |||||| || | |||||| | |||||||| Sbjct 850392 ACAAGGTGAAGAGTGGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCCATCTTCC 850333 Query 225565 AGCTGCTTCCCAGCGAAGAT-----AAGT---CGTTGTTGGTCGGGCGGAATACCTTCCT 225616 | || || ||||| || || || | | |||||||| || ||||| || |||| Sbjct 850332 AATTGTTTACCAGCAAAAATGCAAAAATTAAACACTGTTGGTCTGGTGGAATTCCCTCCT 850273 Query 225617 TGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||||| ||||| ||| ||| ||||||| | || || | | | || || | |||| Sbjct 850272 TGTCTTGAATCTTAGCCTTAACATTTTCGATGATATCCGAAGATCCGACCTCAAGAGTGA 850213 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 | ||||| || ||||||||||| | || | ||||| || Sbjct 850212 TGGTCTTACCAGTCAAAGTTTTAACAAAGATCTGCATCTT 850173 >seq23314 Length=1623 Score = 120 bits (132), Expect = 7e-22 Identities = 198/285 (69%), Gaps = 12/285 (4%) Strand=Plus/Plus Query 7440 AACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGAT 7499 ||| |||||||| || ||||||| | |||| || | |||||| | || | || Sbjct 850 AACTTTATATTTTATTTTTGGTGTTTGAGCTGGAATATTGGGTACT---TCTTTAAGAAT 906 Query 7500 TATAA---GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACT 7556 | ||| || |||||||| ||| ||| || ||| ||| ||| ||| | Sbjct 907 TCTAATTCGGGCAGAATTAGGGAATCCTGGTACTTTAAT------TGGCAATGATCAAAT 960 Query 7557 TTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGT 7616 ||| || |||||| |||| || ||||| ||||| || ||||| ||| | ||||| || | Sbjct 961 TTATAATGTTATTGTTACCGCTCATGCTTTTGTAATAATTTTTTTTATAGTTATACCAAT 1020 Query 7617 TATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGC 7676 ||| || || || || || ||||| || || || ||||| | || || ||||||||||| Sbjct 1021 TATAATTGGGGGATTTGGTAATTGGTTAGTCCCCTTAATATTAGGGGCCCCTGATATGGC 1080 Query 7677 TTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 || || | | ||||||||||| || ||| | ||||| || || Sbjct 1081 CTTCCCTCGAATAAACAATATAAGATTCTGACTTCTACCCCCCTC 1125 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| || |||||||||||||| |||||||||||||| || ||||| || ||||| | Sbjct 1532 ATACTTCGGGGTGACCAAAAAATCAAAATAAATGTTGATATAGAATAGGGTCTCCTCCTC 1473 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 ||| || |||||||| |||||||| ||| | |||||||||| Sbjct 1472 TTGAAGGGTCAAAAAAAGAAGTATTAAGATTACGGTCAGTTAAAA 1428 Score = 87.8 bits (96), Expect = 4e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 371413 GTAGTAATAAAGTTTATAGCGCCTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAAT 371472 ||||||||||| || ||||| |||| || ||| || | ||||| | |||||||||||| Sbjct 1302 GTAGTAATAAAATTAATAGCTCCTAAAATAGAGGAAACTCCTGCTAAATGTAAACTAAAA 1243 Query 371473 ATTGCTAAATCGACGGAACCGCCGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACT 371532 || |||||||| || ||| || || || | | |||| || || ||||||||| Sbjct 1242 ATAGCTAAATCTACAGAAGATCCACTATGTGCAATATTAGATGATAGAGGGGGGTAAACT 1183 Query 371533 GTTCAGCCGGTTC 371545 ||||| || |||| Sbjct 1182 GTTCATCCTGTTC 1170 >seq261 Length=811939 Score = 91.5 bits (100), Expect = 4e-13 Identities = 84/103 (82%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||| ||||||||||| ||||||||||||||||| || || || |||| | ||| Sbjct 494841 TTCAGGATGTCCAAAAAATCAAAATAAATGTTGATAAAGAATGGGGTCTTCTCCACTTGA 494782 Query 370732 TGGATC-AAAAAAGCTAGT-ATTAAAATTTCTATCAGTTAAAA 370772 ||||| || |||| ||| ||| ||||| | |||||| |||| Sbjct 494781 GGGATCGAAGAAAG--AGTCATTTAAATTCCCATCAGTCAAAA 494741 >seq515 Length=573432 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 |||| ||| ||||||||||| ||||| | |||||| || | |||||| | ||| |||| Sbjct 557447 ACAATGTGAAGAGTGGATTCGTTTTGTATATTGTAGTCCGACAAAGTACGTCCAGCTTCC 557506 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 | || || ||||| || || | ||||| || || || ||||| || ||| ||||||| Sbjct 557507 AATTGTTTACCAGCAAAAATTAAACGTTGCTGATCTGGTGGAATTCCCTCCCTGTCTTGA 557566 Query 225625 AT 225626 || Sbjct 557567 AT 557568 >seq1515 Length=152415 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/124 (76%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 |||| ||| ||||||||||| ||||| | |||||| || | |||||| | |||||||| Sbjct 16443 ACAATGTGAAGAGTGGATTCATTTTGTATATTGTAGTCCGACAAAGTACGTCCATCTTCC 16502 Query 225565 AGCTGCTTCCCAGCGAAGA--TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTT 225622 | || || ||||| || | ||| ||||| || || || ||||| ||||| |||||| Sbjct 16503 AATTGTTTACCAGCAAAAACTTAA--CGTTGCTGATCTGGTGGAATTTCTTCCCTGTCTT 16560 Query 225623 GGAT 225626 | || Sbjct 16561 GAAT 16564 >seq993 Length=356753 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081 |||||| | |||||||| | || |||| ||| || ||||| |||||||||||||| ||| Sbjct 102344 CAATACTTGGCCCCATATTCTGGATGTGCTATGGGTGAATACTTTAGAGATAATGGAAAA 102403 Query 5082 CATGCTTTAATCATCTACGATGATTT 5107 ||||| | ||||| || |||||||| Sbjct 102404 CATGCACTTATCATATATGATGATTT 102429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192158491888742