Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq160 306 3e-78 >seq160 Length=904994 Score = 306 bits (338), Expect = 3e-78 Identities = 498/716 (70%), Gaps = 6/716 (1%) Strand=Plus/Plus Query 4419 CAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTT 4478 || || ||||| ||||| || ||||| || || | || | ||| |||||||| || | Sbjct 788689 CAATTCATTCCGATTAAACTGACAGGCAGAGCTTCAGTTAGAAATTCTTGTTCGATTTTA 788748 Query 4479 ACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCA 4538 || || || || |||| | || |||| || ||||| | ||||| | Sbjct 788749 ACAGCATCACAAATGATATTCGTGATACGTTCTTGCGACGGTTTCTGAACTAAATGAGAG 788808 Query 4539 AACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAA 4598 || | | || ||||| ||||||||||||||||| || ||| ||||| ||| || || Sbjct 788809 AAAAGAAGGCAGGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAG 788868 Query 4599 AACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCA 4658 || ||||| || ||||| ||||| | ||| || | ||| |||||||| ||||| ||| Sbjct 788869 AAAGTTAAACCTGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTACCA 788928 Query 4659 GAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCT 4718 || || ||||| ||||| || || || || ||||| | ||| |||| | | | | Sbjct 788929 GAGAAAAATATCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGTGGAGCTT 788988 Query 4719 TTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTAT 4778 ||| | ||||| || | ||||| || || |||||| || || || || || | Sbjct 788989 TTGGAGCTTATCCAATTGAGGGCCCAATTCGCCTTTTTCGCTACACAAGGCATCGTTTCG 789048 Query 4779 ATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGG 4838 || ||||| || || | |||||| ||||| || ||||| || ||||| || | Sbjct 789049 ATGGCGTTGAACAAATATTCTTTTTCTGTAGGGTCCTGTATATAGGTTTCTATCAGAATA 789108 Query 4839 CTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCT 4898 |||||||||||||| || || || || ||||| || ||||| ||||||||||| | |||| Sbjct 789109 CTATACATTTCAGAGTGAATGTTCTCCATAGCTATTTGAAAACCGTAAAAGCAGCGAGCT 789168 Query 4899 TCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCA 4958 |||| || ||||| || | || ||||| || ||||||||||| || || ||||| ||| Sbjct 789169 TCTGGTATCTGAACCTCCTGACTGAATCTCTCGACTAAGTTTTCATTGACAATACCATCA 789228 Query 4959 CTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTA---AGT 5015 || || ||||| || |||||||| || || || | |||||| |||| || Sbjct 789229 GAAGCAGCGAAAAAGGCTAAAACATGCGAAATGAAATGTCTTTCGTC---CTTAGAGAGA 789285 Query 5016 TTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCT 5075 || ||||| || | | ||| || | |||||||| ||| ||||| || || ||| Sbjct 789286 TTCTTCCATTGCTTCGAGTCTCGAGACAGGTCAACTTCCTCAGTTGTCCAGAAGGAAGCT 789345 Query 5076 TCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || |||| ||| ||| | | ||| ||||| |||||||| |||| || ||||| Sbjct 789346 TCTGCTTCTTTATACTTTGTCCATATATCTTTGTACTGAATAGGAAATACTACAAA 789401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426922642557869