Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq318 125 2e-23 seq253 89.7 1e-12 >seq318 Length=663677 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||||| ||||| ||||| || ||||| ||||| | || ||||| Sbjct 605906 GAGACGGAGAACCAAGTGAAGTGTAGATTCTTTCTGAATGTTATAATCAGACAAGGTTCT 605847 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || ||| || |||||||| | || || ||||| | | |||||||| Sbjct 605846 GCCATCTTCCAGTTGTTTTCCAGCGAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTC 605787 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || |||||||| ||| ||| |||| | | |||| || || ||||| | || Sbjct 605786 CTTGTCCTGAATTTTGGCTTTTACATTCTCGATGGTGTCGGATGGTTCCACTTCCAAGGT 605727 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || ||||| || || |||| |||||| Sbjct 605726 AATGGTCTTTCCAGTTAGAGTTTTGACAAAGATCTGCAT 605688 Score = 116 bits (128), Expect = 9e-21 Identities = 152/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || || |||||||| ||||| ||||| | || |||| |||||||| | Sbjct 605666 CAAG-TGGAGTGTGGATTCTTTTTGAATGTTATAATCTGACAAGGTTCGGCCATCTTCCA 605608 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| | || || ||||| | | ||||||||||| ||||| | Sbjct 605607 GTTGTTTTCCAGCAAAGATCAATCTTTGTTGGTCTGGGGGAATTCCTTCCTTATCTTGGA 605548 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| ||| |||| | | |||| || || || ||||| || |||||||| | Sbjct 605547 TCTTGGCTTTAACATTCTCGATGGTGTCAGATGGTTCAACCTCAAGGGTGATAGTTTTAC 605488 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || ||||| |||| ||||||| Sbjct 605487 CAGTCAGCGTTTTCACAAAGATCTGCATT 605459 >seq253 Length=804807 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||| ||||||||||| || ||||| || ||||| || | ||||| | |||||||| Sbjct 281386 ACAAGGTGAAGAGTAGATTCCTTTTGTATATTGTAGTCCGACAAAGTACGTCCATCTTCC 281445 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||| || || || || | | ||| || || | | ||||| ||||| | |||| Sbjct 281446 AATTGTTTACCAGCAAAAATTAAACGCTGTTGATCTGGTGGAATTCCCTCCTTGTTTTGA 281505 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || || || ||| | || | | | || ||| || || |||||||| || || || Sbjct 281506 ATCTTAGCCTTAACATTTTCGATGGTATCCGAAGGTTCGACCTCAAGAGTGATGGTCTTA 281565 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || | ||| || || |||| |||||| || Sbjct 281566 CCAGTCAAAGTTTTAACAAAGATCTGCATCTT 281597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153460190255703