Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq160 201 1e-46 seq1059 86.0 7e-12 >seq160 Length=904994 Score = 201 bits (222), Expect = 1e-46 Identities = 400/589 (68%), Gaps = 10/589 (2%) Strand=Plus/Plus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||| |||||||| | ||||||||||| |||||||||||| || || ||||| Sbjct 788818 CAGGCAAAGTCACAATGCAAACCTTCATCCCTGGAAATCAATTCATTTGAGAAAGTTAAA 788877 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 |||||||| || || || || || | ||| ||||| || ||||| || || || || Sbjct 788878 CCTGGCATCAAACCACGCTTCTTCAACCAGAATATAGCTGCAAAACTACCAGAGAAAAAT 788937 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTG--CATTATAATCAG 23686 || || ||||| || || || || |||| ||| | | || || | | || | | Sbjct 788938 ATCCCTTCAACTGCAGCGAAAGCTACAATTCGTTCAGCGAAAGTGGAGCTTTTGGAGCTT 788997 Query 23687 AAATCCAtttttttGTCCAATTAGCCTTCAATTT---TACACACTCAATTGTTTCAATTG 23743 | |||| || | |||||| ||||| ||| |||||| || ||||| || | Sbjct 788998 A--TCCAATTGAGGGCCCAATTCGCCTT---TTTCGCTACACAAGGCATCGTTTCGATGG 789052 Query 23744 CTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTAT 23803 | || || | | | ||||||| | || |||||| || || || || | ||||| Sbjct 789053 CGTTGAACAAATATTCTTTTTCTGTAGGGTCCTGTATATAGGTTTCTATCAGAATACTAT 789112 Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863 |||||||||| ||||| || || ||||| || ||||| || ||||| || | |||||| | Sbjct 789113 ACATTTCAGAGTGAATGTTCTCCATAGCTATTTGAAAACCGTAAAAGCAGCGAGCTTCTG 789172 Query 23864 ACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAG 23923 | ||||| || | | ||||| | |||| ||||| || |||||||||||| || Sbjct 789173 GTATCTGAACCTCCTGACTGAATCTCTCGACTAAGTTTTCATTGACAATACCATCAGAAG 789232 Query 23924 CAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCC 23983 |||| || || || | ||||| || ||||||||||| || | || | || |||| Sbjct 789233 CAGCGAAAAAGGCTAAAACATGCGAAATGAAATGTCTTTCGTCCTTAGAGAGATTCTTCC 789292 Query 23984 AATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCAC 24043 | | || ||| || | |||||||| ||| |||||| || || || Sbjct 789293 ATTGCTTCGAGTCTCGAGACAGGTCAACTTCCTCAGTTGTCCAGAAGGAAGCTTCTGCTT 789352 Query 24044 GCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAA 24092 |||||| || ||| ||||| || | || || ||||||| ||| || Sbjct 789353 CTTTATACTTTGTCCATATATCTTTGTACTGAATAGGAAATACTACAAA 789401 >seq1059 Length=259062 Score = 86.0 bits (94), Expect = 7e-12 Identities = 313/477 (66%), Gaps = 15/477 (3%) Strand=Plus/Minus Query 128465 AAAATACCCAAATGAATTATATATACCAGGTAAAAGAAAATGGTTAAAGGTAAAAAGGGA 128524 || ||| ||||| | ||| ||| ||| |||||||| | ||||| || || |||| ||| Sbjct 145643 AAGATATCCAAA-GCATT-TATGAACCTGGTAAAAGGCACTGGTTGAAAGTGAAAAAGGA 145586 Query 128525 TTATTTAAATAATGGATCAATGGCAGATTCTGCTGATTTAGTTGTGTTGGGTGCATATTA 128584 |||| | ||| ||||||||||| ||| ||||| | || | || || | || Sbjct 145585 TTATCTTTTCGGTGGTGCAATGGCAGATAGTGCAGATTTGATGGTCCTCGGAGCTTGGTA 145526 Query 128585 TGGTAAAGGTAAAAGATATGGAGGAATAAAATCTATATTTCTTATGGGATGTTATGATAA 128644 ||||| || |||| | ||||| || | || | ||||||||||| |||| || Sbjct 145525 TGGTACTGGCAAAA---AAGGAGGGATGATGTCCGTTTTTCTTATGGGCTGTTTCAATCC 145469 Query 128645 AGAAACAGATACATGGAAAACTGTTAC-AAAATGCTCA--GGGTTTAATGATGAAACATT 128701 |||| | | || ||||| || ||| ||| || || | | ||| ||||| | Sbjct 145468 TGAAAGCGGAAAATTTTGTACTGTAACTAAAGTGCACACTGGTCATGACGATAAAACACT 145409 Query 128702 AAAAGAATTACA--ATCAA-TTGATATGATTAAAATTAGTAAAAATAAAGATAAAATTCC 128758 || || | || || || |||| ||| | ||||| ||| || | | ||| |||| Sbjct 145408 GGAAAAACTGCAGGATGAACTTGACATGGTGAAAATCAGTCAAGACAGTTCCAAAGTTCC 145349 Query 128759 AAATTGGTTAATTATTAACAGTATTCATTA-TCCGGATTTTATTATCAAAGATCCAAAAT 128817 |||||||| | | ||| | ||| | ||| |||||| || ||||| || Sbjct 145348 GAATTGGTTGA-GCTGTACAAAAACCATGATTCCCGATTTTGTTGCACGGGATCCCAAGA 145290 Query 128818 CATCTCCTGTTTGGGAAATAATTGGATATGAATTTACAAAATCACCATCT-CATACAGCG 128876 | || |||||||| |||| ||| |||||||| | || || | ||||| || Sbjct 145289 AACAGCCAGTTTGGGAGATAACAGGAGCAGAATTTAC-TCAGCATGATGTACATACTGCA 145231 Query 128877 AATGGAATATCAATTAGGTTTCCTAGATGCAAAAATATACGAAATGATAAAAATTGG 128933 ||||||| || || || ||||| || | || ||| || |||||||||| ||| Sbjct 145230 GATGGAATTTCTATCAGATTTCCGAGGGTGACAAGGATAAGAGATGATAAAAACTGG 145174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521328991790200