Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leptinotarsa_20decemlineata_20[genbank_20GCA_5F000500325.1_202013- 12-02] 24,393 sequences; 1,170,241,964 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq792 183 7e-41 seq318 163 7e-35 seq805 129 1e-24 >seq792 Length=424820 Score = 183 bits (202), Expect = 7e-41 Identities = 164/206 (80%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| ||||| || || || |||||||||||||| ||| ||| ||| Sbjct 96929 CAAATTTTCGTTAAAACACTCACGGGTAAGACCATCACCCTCGAGGTCGAACCCTCTGAC 96988 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || ||||| ||||| ||||| || || |||||| Sbjct 96989 ACCATCGAAAACGTCAAGGCTAAGATCCAAGACAAGGAAGGGATCCCCCCAGATCAGCAA 97048 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| |||||||||||||||||||| | |||||| |||| || || | Sbjct 97049 AGATTGATCTTCGCTGGAAAACAGCTCGAAGATGGTCGAACTCTTTCCGACTACAATATT 97108 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 97109 CAGAAGGAGTCCACCCTCCATCTCGT 97134 >seq318 Length=663677 Score = 163 bits (180), Expect = 7e-35 Identities = 164/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||||| || ||||| || || ||| | || |||||| || ||| Sbjct 605691 CAGATCTTTGTCAAAACTCTAACTGGAAAGACCATTACCTTGGAAGTGGAACCATCCGAC 605750 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| || ||||||||||| |||||||| || || ||||| ||| Sbjct 605751 ACCATCGAGAATGTAAAAGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCAACAA 605810 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||| |||||||| || |||||||| || || |||| | ||||||||| | Sbjct 605811 AGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCAGAAC-CTTGTCTGATTATAACAT 605869 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 || |||||||| ||||| || |||| || Sbjct 605870 TCAGAAAGAATCTACACTTCA-CTTGGTT 605897 Score = 159 bits (176), Expect = 8e-34 Identities = 163/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || || ||||| |||||||| ||||| ||| || ||| Sbjct 605463 CAGATCTTTGTGAAAACGCTGACTGGTAAAACTATCACCCTTGAGGTTGAACCATCTGAC 605522 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || ||| ||||| || || || |||||||| || || ||||| ||| Sbjct 605523 ACCATCGAGAATGTTAAAGCCAAGATCCAAGATAAGGAAGGAATTCCCCCAGACCAACAA 605582 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || |||||||| || |||||||| | || |||| | ||||||||| | Sbjct 605583 AGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAAC-CTTGTCAGATTATAACAT 605641 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||||||||| ||||| || |||| || Sbjct 605642 TCAAAAAGAATCCACACTCCA-CTTGGTT 605669 Score = 147 bits (162), Expect = 5e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||||| || ||||| || || ||| | || || ||| || ||| Sbjct 606147 CAGATCTTTGTCAAAACTCTAACTGGAAAGACAATTACCTTGGAAGTTGAACCATCCGAC 606206 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| || || || |||||||| || || || || ||||| ||| Sbjct 606207 ACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCAACAA 606266 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||| |||||||| || |||||||| | || |||| | ||||||||| | Sbjct 606267 AGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAAC-CTTGTCAGATTATAACAT 606325 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || |||||||| || || ||| | ||| | | |||||| Sbjct 606326 TCAGAAAGAATCTACGCTTCATTTGGTTCTTCGTCTCAGA 606365 Score = 129 bits (142), Expect = 1e-24 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || |||||| | || ||||| || || || | || || ||| || ||| Sbjct 605919 CAGATCTTTGTCAAAACTTTAACTGGAAAGACCATAACGTTAGAAGTTGAACCATCTGAC 605978 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| || || || |||||||| || || || || ||||| ||| Sbjct 605979 ACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCCCCAGACCAACAA 606038 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| || |||||||| | || | | ||||||||| | Sbjct 606039 AGATTGATCTTTGCTGGAAAACAACTGGAAGATGGCCGAACCTTATCAGATTATAACATT 606098 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || |||||||| ||||| || |||| || Sbjct 606099 CAGAAAGAATCTACACTTCA-CTTGGTT 606125 >seq805 Length=567825 Score = 129 bits (142), Expect = 1e-24 Identities = 157/210 (75%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| || ||||| || || || | || || ||| || ||| Sbjct 473593 CAAATATTTGTCAAAACTTCAACTGGAAAGACCATAACGTTAGAAGTTGAACCATCTGAC 473652 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| || || || |||||||| || || || || ||||| ||| Sbjct 473653 ACCATCGAGAACGTGAAAGCTAAAATCCAAGACAAAGAGGGCATTCCGCCAGACCAACAA 473712 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||| |||||||| || |||||||| | || |||| | | ||||||| | Sbjct 473713 AGATTGATCTTCGCTGGAAAACAACTGGAAGATGGCCGAAC-CTTGTCAGCTTATAACAT 473771 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTT 178132 || | |||||| ||||| || |||| ||| Sbjct 473772 TCAGAGAGAATCCACACTCCA-CTTGGTTT 473800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203354991493242