Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq28624 551 6e-152 seq6 105 8e-18 >seq28624 Length=432676 Score = 551 bits (610), Expect = 6e-152 Identities = 1197/1771 (68%), Gaps = 28/1771 (2%) Strand=Plus/Minus Query 52808 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 52867 ||||||||||||| | ||||||||||| || | ||| |||||||| ||||| | | Sbjct 59682 GTGAATTGAATGGCGTTTGCGGCGGGTTTCGTCCGCAAATAATACATTCCAGTTTTCAAA 59623 Query 52868 CCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATA 52927 || | |||| ||| ||||| || ||| | ||| ||| | || || || | Sbjct 59622 CCCATCTTCCAAGCGTGGAAATGAATTGATGTCAATTTACCGTAATTTGGCTCAGCAACG 59563 Query 52928 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 52987 || || || | ||||| ||||||||||| || || || |||||||||||||| | || Sbjct 59562 TGAATGTTAAACGATTGGCTTTGATCGATAAAAGCACCTCTGTCTGCAGCCATCTGAATT 59503 Query 52988 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 53046 | || || || || ||||| | ||||| || | ||| || | |||||| || | Sbjct 59502 GTAGTTTTGACTGATATCTCCCATACTGTTTTGTATAGCTCCCTGA-TATCTTTCGGTAT 59444 Query 53047 GTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 53103 || |||| ||||| || ||| || || || |||||| || || |||| Sbjct 59443 ACTTTCAATATTTTGAATGGAGCCATTATTGTGAATTATAAGATTCTTCATATCGTCATC 59384 Query 53104 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 53163 ||| | | || || ||| ||| ||| ||||| |||| || || || ||||| || Sbjct 59383 CCACAGCTCGGCCTGTGTCAAATCTCGAAGAAGATGGTGATTTACGACCTGGAATTCGCC 59324 Query 53164 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 53223 ||| || ||||| || || ||||| || |||| || | |||||||| || || Sbjct 59323 AGATAAAACTCTGCGCTGATATATATTTGAAGTGAACGGCTCAAAGGACTCATTGTTACC 59264 Query 53224 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 53283 | |||||| ||||| || || || ||||| || || | || | |||||| | ||| Sbjct 59263 AAGAATTTGTGCAGTAGAAGCTGTAGGCATTGGAGCTAGTAACAGCGAATTTCTTAAACC 59204 Query 53284 GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNN 53343 || | || ||||| ||||| |||| | ||| ||||| || |||| || Sbjct 59203 GTGTTTTGCTATTTTTTCTTTGAGAGTTGTCCAGTTCCATAGGTCCGTTGGCGTTTTCTC 59144 Query 53344 NNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATG 53402 ||| | |||||| ||||| || | | | ||| |||||| | ||||| Sbjct 59143 CCACATATCATATTGCAAAATACCCTTACTTGCAGGGCTA-CCTTCATATGAACTGTATG 59085 Query 53403 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGA 53462 | || | || ||||||| |||||| || || |||||||| || |||||||| || || | Sbjct 59084 GGCCATATTTTTCAGCTAATTCACAGCTTGCTTCTAATGCTCCATAATAAATAGTCTCAA 59025 Query 53463 AGATCTTCTTATTTAGATCTTGT-GCTTCCAGGCTATCAAATGGATAATTTAAG-AGAAT 53520 | || || || ||| | | | |||| || ||| | || || | | | | || Sbjct 59024 AAAT-TTGTTGGTTAAGTTTGATAGCTTTTTCACTTTCATACGG-TATTCTCATTATAAC 58967 Query 53521 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 53580 ||| || || ||||||||||||||||||||||| ||||||||||||||| |||| || | Sbjct 58966 AAAAGCATCAGCTAATCCTTGAACACCAATACCAATAGGTCTATGTCTCATATTGGAATT 58907 Query 53581 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAAT 53640 || ||||| || | ||| |||||||||| || || |||||||| | ||| || Sbjct 58906 TTTTGCTTCAGGGACAGGGTAATAATTAACTTCAATGATTTTATTCAAATTTTGTGTGAT 58847 Query 53641 TACTTTGACCACATCCTTCAGTTTGAGAAA---ATCAAATTGTCCATCTATTACAAACAT 53697 | ||| || || |||| ||| ||| || | ||| | || |||| ||||| Sbjct 58846 GATCTTGGTGACTTCTTTCAATTTTTCAAAGTTATAAGATTTGTCTTCGTTTACGAACAT 58787 Query 53698 GTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 53757 || || ||||||||||| | ||| || || ||||| |||| || ||| | |||| || Sbjct 58786 ATTTAAAGCAATAGATGCTAAATTGCACACTGCTACTTCATCAGAATCAGTGTATTCTAC 58727 Query 53758 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 53817 || || || || ||||| || || || || || |||||||||||||| || |||||| | Sbjct 58726 AATTTCCGTACAGAGATTGCTGCATTTAATAGTGCCTAAATTTTGTTGGTTGCTCTTTCT 58667 Query 53818 GTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 ||| || | || || ||||| || ||||| || |||||||| | || | ||| | ||| Sbjct 58666 GTTGCAAGAGTCTTTGTAAAGCATAAATGGTGTGCCAGTTTCCACTTGTGCTTCAACAAT 58607 Query 53878 CGCTTTCCAGACGACACGAGCCTTTA--TTATAGATTTGTATCTCTTTTCTCTTTCGTAT 53935 |||||||| | | ||||| | | | | || ||||||||||| ||| ||| Sbjct 58606 AGCTTTCCACAAAATTTGAGCCCTAACTTGCTTGA--CAAATCTCTTTTCTTCTTCATAT 58549 Query 53936 AGTGTATACAATCGT-TCAAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCAT 53993 | ||| || | | ||||| || || |||| |||| | | ||| || ||||| |||| Sbjct 58548 TTTTCATA-AAGCTTCTCAAATTCTTC-CCCCCAACAGTCTGCAAGACCGGGACAGTCAT 58491 Query 53994 CCGGACACATCA-ACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGG 54051 |||||||| | | | | |||| || | ||| |||| |||||| || || || || Sbjct 58490 GTGGACACATGAGGCTCCAATTCTCATTCTT--TTCAACTCTTTTCATGAACAGGTCTGG 58433 Query 54052 AATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 54111 ||||| ||||| ||| || ||||||| | ||| || || || || |||||||| Sbjct 58432 GATCCAGAGAGCATAAAACAGTTCTCTGGCACGTACTTCTTCCTTACCAGTGTTCTTTTT 58373 Query 54112 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCC 54171 | ||| | || | | | ||||| ||||| ||||| | ||| |||| | | |||| Sbjct 58372 TAAATCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGGTAGATGGCAAAAGCTCC 58313 Query 54172 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 54231 ||| ||||| || || |||||||| | ||||| || |||||||| || || | |||||| Sbjct 58312 AGGACGTTTATTGCCACCCTGATCAACATATCTTGCTGTGTTATTGTACACCCGCAACAT 58253 Query 54232 TGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT 54291 |||| || |||||| || ||||||| || || | || || | || | || | || Sbjct 58252 GGGAACAAGACCATTAGAAACACCATTTGTTCCAGCAATGTAAGTACCTTTAGCTCTTAT 58193 Query 54292 ATTA-CTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 54350 | | ||| || ||||| || || || ||||| || ||||| ||| | || | Sbjct 58192 GCAATGGACATGA-AGTCCTATGCCTCCAGCAGACTTAGAAATCAATGCACATTGCTTCA 58134 Query 54351 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 54410 | || |||||||| || || ||||||||||| |||| || | ||||| || | Sbjct 58133 ATGTGTCATAGATACCTTCAATACTATCATCTTTCATAGCAATCAAGAAACAAGAGGATA 58074 Query 54411 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 54470 ||| | || ||| | ||| ||| | |||||| ||||| || || |||||| Sbjct 58073 GTTGTGGTCGTGGAGTAGCAGCAGAAAAAAGTGTAGGACTGGCGTGTGTGAAGTATTTTT 58014 Query 54471 CAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 54530 | || | || ||||| || | || |||| || ||||| | ||||||||| | | Sbjct 58013 CTGATAATAAGTTGTATGTATTAATTGCTGCATCAATATCTTCTCCATGAATTCCAATAG 57954 Query 54531 CGACACGCATTAACATGTGCTGAGGTCTTTC 54561 || ||||| | |||||| || || | ||| Sbjct 57953 AAACTCGCATAAGCATGTGTTGGGGACGTTC 57923 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 54568 CTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 |||||||||||| |||| || || ||| | |||||||||||||| ||||| ||||| || Sbjct 57836 CTTGTTGTTTATCTTCAATAAATATGATCTCTCCAAAGTTTTAAATCCAAAGTAGTTATA 57777 Query 54628 TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTT 54678 | ||| ||||| || |||| ||| | || | |||| | || |||| ||| Sbjct 57776 TTTAAAATCTCGGTCATAAACAATTGCAGAATCGAGTCTCTCTTTATTTTT 57726 >seq6 Length=1691400 Score = 105 bits (116), Expect = 8e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||| | | |||||| ||||| | || ||||||||| ||||| | || || ||||| Sbjct 1115753 ATCTCTGATATATGTGTCAATGAGCAGGGAATACATTTCAGAATGGACATTCTCCATGGC 1115812 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || |||||||||||||| || || || | || ||||| | | || || || Sbjct 1115813 AATTTGGAAACCGTAGAAACATCTCGCTTCAGTTACTTGCACTTCCTGAGAGAAGCGCTC 1115872 Query 24515 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 24574 ||| ||| ||||| || || ||||| || ||||| || ||||||||||| || || Sbjct 1115873 AACTAGATTCTCATTTACAATGCCGTCTGATGCAGCAAAGAAGGCCAATACATGCTTGAT 1115932 Query 24575 aaa 24577 || Sbjct 1115933 GAA 1115935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593499125094960