Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq852 228 7e-55 seq27819 91.5 1e-13 seq397 91.5 1e-13 seq504 82.4 7e-11 >seq852 Length=562639 Score = 228 bits (252), Expect = 7e-55 Identities = 844/1295 (65%), Gaps = 52/1295 (4%) Strand=Plus/Plus Query 105312 GTTTATCGCGTTGAGCAAGTCGCCGTTATCGGCATCAATCTCCCAAGCAAACAGGCCGCC 105371 ||| || || || | || || |||||||| || || |||||||| || || || || || Sbjct 32594 GTTCATAGCATTTAATAAATCTCCGTTATCCGCGTCGATCTCCCACGCGAAAAGACCACC 32653 Query 105372 CAATTTATTTCGGTCGACATATTTAACTTTTCCTAACACAGAGTCGA-CGCTGTCAAACG 105430 | ||||| |||||||||| |||| | | ||||| ||| | |||| ||| Sbjct 32654 GAGCTTATTATTTCTGACATATTTACCTTTCTCAATAACAGA-TCGTGCATTGTCGTACG 32712 Query 105431 AAATCAAATCACCTTTACTTTTATCGAAA-ACGTACGACGCTTGAGCGGCGCTGTCAAAC 105489 ||| | ||||||| | | | ||| || |||| |||||||||| |||| ||| | Sbjct 32713 TAATTAGATCACCTGT-CGAAGGCCTAAACACATACGGCGCTTGAGCGACGCTATCATAA 32771 Query 105490 GTGTACACATAATTGT--TGAGATCTTT---TTG-AATTTGACGATAATCTACAACACCG 105543 | || | | || || | ||| | | ||| | | ||||| || |||||| Sbjct 32772 TGGAACTCCCATTTTCCCTGCGCAATTTCATTCGCAATCTCTCTGTAATCCACCACACCG 32831 Query 105544 TCCTCCCACGTGCCC--GAC----CCCGGCCCGTTGCCAGTGCCGGAAAAATAGTTGTCA 105597 || | ||| || || ||| || | | ||||| ||| || || | ||| || Sbjct 32832 TCTTGCCATGTACCTTTGACAGGACCAGAAGCATTGCCTGTGAAGGGAATGTCGTTTTCG 32891 Query 105598 TTCGTATAATTTGTTACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATT 105657 | | | | || || ||||| || || |||||||| || || || || | | Sbjct 32892 TACCCGTGA------ACACCAGTCCATCCACGTCCGTACATAGCAACACCAACTACGACC 32945 Query 105658 TTGTTGGGATCGACGCCTTGTTTCAG-TAAC--GCATCGA-CAGCGTAGTGTGTAGTGTA 105713 || || |||| ||| ||||| || |||| | || | || || | | || ||||| Sbjct 32946 TTCTTCGGATTGACTCCTTG----AGCTAACAAGTATTTAACACCGAAATCAGTCGTGTA 33001 Query 105714 TAGCTCTTCCGAGTTCCAACTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGT-GT 105772 | || | | ||||| ||| ||||| | | ||| |||| | || | || || Sbjct 33002 TGTTTCCTTAGGATTCCAGGCTGGAGCGTACAGAGATGTCTGGT-GACCTAGGGTGTCGT 33060 Query 105773 TTGACCAAGCCCCTTTAAAATCGTAACTCATGAGAAATATTTTGCCTAATGACTTTTGCG 105832 | ||||| || || || || ||||| |||||| || || | | | | | || || | Sbjct 33061 TCGACCACGCTCCCTTGAAGTCGTAGTTCATGAAGAAGATGTGGTCCATGTAGTTCTGTG 33120 Query 105833 CTTCGGC-GTAGTTTACCACGGCAATCTTGTCGTAACCCGCGCTTATAGCGCTTGTTAAT 105891 | || | ||||| ||||| ||||||||| |||| || || ||||| |||| Sbjct 33121 CG-CGACTGTAGTCGACCACTTGAATCTTGTCCCAACCAGCACTGATAGCTGAAGTTAGC 33179 Query 105892 TCGTAAACCCTGCCGGTTTGCGCTTCGAGGTCGTCTAGCATTGCGCGCAGCTCCTCCAAC 105951 ||||| | |||| || | | | |||| ||||| | || || || | || Sbjct 33180 TCGTACTTCTTGCCAGTAGCAGATGATAACTCGTTGAGCATCTCACGAAGTTCTTTCATT 33239 Query 105952 AACAAAATGTATGTTTTGGCGTCACCGTCCGCATCGCCCAACGACGGGTTAGCCCCTTTG 106011 || | | || |||| || || | | | | |||| | |||||||| || ||| Sbjct 33240 AAGAGCACATAGGTTT---CGCCATCCTTAGGACCGCCGAGGTTAGGGTTAGCGCCCTTG 33296 Query 106012 CCGCCCGGAAACTCCCAATCGATGTCTACACCGTCAAAGAATTTCCACACTTGCAGAAAT 106071 ||||| || || ||||||||||| || ||||| ||||||||||||||| ||| ||| Sbjct 33297 CCGCCAGGGAATTCCCAATCGATATCGACACCATCAAAGAATTTCCACGTCATCAGGAAT 33356 Query 106072 TCCTTAACCGAATCTACAAAAACGTTTCTTTTTTCAACATCGTGCATAAAATAA----AA 106127 |||||||| |||| || ||| || || || || | || ||| ||| || || Sbjct 33357 TCCTTAACTGAATTGACGAAACGGTCCCTCTT---CACTTTGT-CATCAAAGAAGAAGAA 33412 Query 106128 TGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAAATGGGGGTTTGCTAA 106187 || || | |||||||| ||||| || || || || |||||||| | || | ||| Sbjct 33413 AGGATCAGCAAGAGTCCAACCTCCAATAGACGGCAGGATTTTTAAGTCAGGTCTGGCTTG 33472 Query 106188 TTTTGCCGCCATCAACTGTCCAAAATTGCCTTTATACGGCTCGTTCCAAGCGGACACACC 106247 || | ||||| || || || ||||| || || || || ||||||| || | || Sbjct 33473 CTTCAATGACATCAGTTGACCGAAGTTGCCCTTGTAAGGTTCATTCCAAGATGATAATCC 33532 Query 106248 TTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGAATGGCAACTTTGAAATCTTCGCG 106307 ||||| ||||| || | |||||||| |||||||| |||| || ||||| ||||| || Sbjct 33533 CTTTTGTGGTTTCTGGAGAGCGGCCCATGGATCGTGGATGGACACCTTGAAGTCTTCTCG 33592 Query 106308 TCCCTTGCACGATCTTTGCAAAGATTCAAAGCTTCCGGGTATCGTTTTGAGGGCGTCGTT 106367 || |||| || | |||||||| || || || || || || | |||||| Sbjct 33593 ACCGCTGCAAGACCGTTGCAAAGCTTGGAAACTGCCTTCGATTTCCTTCAAACTGTCGTT 33652 Query 106368 TATTCCATCGCCGCCGCAGATGGGTATGAAACCATACAACAAGTGTGATAAATTTGGCAA 106427 || ||||| || || || || || ||||| || || || | || | | ||||| | Sbjct 33653 GATGCCATCTCCCCCACAAATTGGGATGAACCCGTATAAAAGATGCGTGAGGTTTGGAAT 33712 Query 106428 GGGAACTTTGTCTACGGGAAAGTTGCGCCCGTACACACCCCACTCAACAAAGTACGCAGC 106487 |||| |||||| || || || || || ||||||||||| || || ||||| ||| | Sbjct 33713 TGGAATTTTGTCCACAGGGAACTTCCGGGGATACACACCCCATTCTACGAAGTAGGCACC 33772 Query 106488 GACAATTTTATCC---TCTCT-CCTGCCAGGTTTGTTGTTTTCCAGCCAT-GTGTATTCG 106542 ||| | ||| ||| | | | | || || ||||| || | | |||| ||||| || Sbjct 33773 GACTACTTT-TCCAGATGTTTGCTTGAAGGGCTTGTTCTTCT-CTCCCATGGTGTAATCC 33830 Query 106543 AGCGGTGCCAGATGGCCGCCGTCGGTGTCTGCGAC 106577 || |||| | |||| ||||| ||||| || || Sbjct 33831 AGGGGTGGTAAGTGGCTACCGTCCGTGTCAGCTAC 33865 >seq27819 Length=1354 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || ||||| || | ||| || |||||| | ||||||||||| ||||| Sbjct 1171 AAAATTCAGGACAAAGAGGGGATTCCCCCTGACCAACAACGTCTTATCTTTGCCGGCAAG 1230 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| |||||||| | || || | || ||||| || ||||||||||| ||||| || Sbjct 1231 CAATTGGAAGATGGCCGTACACTGTCGGACTACAACATCCAGAAGGAATCCACTCTGCAT 1290 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 | || ||| |||| |||||||| Sbjct 1291 TTAGTATTAAGATTGCGAGGAGG 1313 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || ||||| ||||||| ||||| ||||| ||| | |||||| ||| | |||| Sbjct 745 GACCAACAGCGACTTATTTTTGCCGGCAAGCAATTAGAAGATGGACGCACTCTTTCCGAC 804 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||||||||| |||||||| | || || |||| |||||||| Sbjct 805 TACAACATTCAGAAGGAATCCACTCTTCATTTAGTATTGAGATTGCGAGGAGG 857 >seq397 Length=962699 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| | || || ||||||||||| ||| ||| || | Sbjct 58209 ATGCAGATTTTCGTTAAAACTCTCACCGGTAAAACCATTACTCTCGAGGTGGAGCCTTCT 58150 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || ||||| ||| | || ||| ||| Sbjct 58149 GACACCATAGAAAATGTAAAAGCTAAAATTCAAGACAAAGAGGGTATTCCACCAGACCAA 58090 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||||| || ||||| || || ||| |||||||| ||| || | || ||||| Sbjct 58089 CAAAGACTGATATTTGCTGGTAAGCAATTGGAAGATGGGCGCACTTTGTCAGACTACAAC 58030 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || ||||| |||||||||||||| | || ||||| Sbjct 58029 ATCCAGAAAGAATCTACTCTTCATTTAGTATTACG 57995 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | ||||| || || || ||||| || ||| ||| || || | Sbjct 58666 AATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTTGAGCCATC 58607 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | || ||||||| || || ||||| | || ||||| Sbjct 58606 CGATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGCATACCACCTGATCA 58547 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || | || || |||||||| ||| | ||||| ||| | | |||||||| Sbjct 58546 GCAGCGATTGATTTTCGCGGGCAAGCAATTAGAAGACGGACGTACTCTTTCGGATTACAA 58487 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 |||||| || ||||||||||||||| | || || || ||||| |||||| Sbjct 58486 TATTCAAAAAGAATCTACTCTTCACCTCGTCTTGCGTTTACGTGGAGGG 58438 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| ||||| | ||||| |||| || |||||||| ||| || |||||| | Sbjct 56613 ATGCAGATATTTGTTAAAACCCTGACCGGTAAAACCATAACCTTGGAGGTGGAACCTTCC 56554 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || || ||||| | || ||| || Sbjct 56553 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCAG 56494 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | || |||||||| ||||||||||||||| ||| || |||| ||||| Sbjct 56493 CAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGTCGCACTCTGTCCGACTACAAC 56434 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || || ||||| || ||||| ||| |||| || || Sbjct 56433 ATCCAAAAGGAGTCCACTCTCCACTTGGTTTTGCG 56399 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| |||| || |||||||| ||| || |||||| | Sbjct 56841 ATGCAGATCTTTGTTAAAACCCTGACTGGTAAAACCATCACCTTGGAGGTGGAACCTTCT 56782 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || ||| || |||||||| | ||| ||| || Sbjct 56781 GACACCATTGAAAATGTGAAGGCCAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCAG 56722 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | |||||||| ||||| ||||||||||||||| ||| || |||| || || Sbjct 56721 CAGCGTCTTATCTTCGCGGGTAAACAACTGGAAGATGGTCGCACTTTGTCCGACTATAAC 56662 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 || ||||| || || || ||||| ||||| Sbjct 56661 ATCCAGAAAGAGTCCACCCTTCATCTGGTG 56632 >seq504 Length=80497 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || |||||| | ||||||||||| ||||| ||| |||||||| | || || | || Sbjct 72775 GACCAACAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGCCGTACACTGTCAGAC 72834 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| |||||||| ||||| ||||| || | ||||| |||| ||||||| Sbjct 72835 TACAACATTCAGAAAGAATCCACTCTGCATTTAGTGTTGAGATTGAGAGGAGG 72887 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || ||||| | |||||||| ||||| ||||||||||||||| | || || | || Sbjct 73003 GACCAACAGCGTCTTATCTTCGCGGGTAAACAACTGGAAGATGGCCGTACACTGTCGGAC 73062 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| || ||||||||||| ||||| || | ||||| |||| ||||||| Sbjct 73063 TACAACATCCAGAAGGAATCCACTCTGCATTTAGTGTTGAGATTGAGAGGAGG 73115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428179509717935