Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq852 288 8e-73 seq27819 95.1 1e-14 seq397 93.3 3e-14 seq504 82.4 6e-11 >seq852 Length=562639 Score = 288 bits (318), Expect = 8e-73 Identities = 601/887 (68%), Gaps = 9/887 (1%) Strand=Plus/Plus Query 97380 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 97439 || || ||||| || || |||||||| || || || || | | || || |||| ||| Sbjct 32901 ACACCAGTCCATCCACGTCCGTACATAGCAACACCAACTACGACCTTCTTCGGATTGACT 32960 Query 97440 CCTTGTTCCAGTAACGCATCGACAGCGTAATGTGTAGTGTACAGCTCTTCCGAGTTCCAA 97499 ||||| | | || | ||| || ||| || ||||| || | | ||||| Sbjct 32961 CCTTGAGCTAACAAGTATTTAACACCGAAATCAGTCGTGTATGTTTCCTTAGGATTCCAG 33020 Query 97500 CTTGGCGCGTAGACTGTTGTTTGGTAGCCCAAATCCGT-GTTTGACCAAGCCCCTTTAAA 97558 ||| ||||| | | ||| |||| | || | || ||| ||||| || || || || Sbjct 33021 GCTGGAGCGTACAGAGATGTCTGGT-GACCTAGGGTGTCGTTCGACCACGCTCCCTTGAA 33079 Query 97559 ATCGTAAGTCATGAGAAATATTTTGTCTAATGACTTTTGCGCTTCGGC-GTAGTTTACCA 97617 ||||| |||||| || || | ||| | | || || || || | ||||| |||| Sbjct 33080 GTCGTAGTTCATGAAGAAGATGTGGTCCATGTAGTTCTGTGCG-CGACTGTAGTCGACCA 33138 Query 97618 CGGCAATCTTGTCGTAGCCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTTT 97677 | ||||||||| | || || || ||||| |||| ||||| | |||| || Sbjct 33139 CTTGAATCTTGTCCCAACCAGCACTGATAGCTGAAGTTAGCTCGTACTTCTTGCCAGTA- 33197 Query 97678 GCACTTCG-AGGTCGTCTAGCATTTCGCGCAGCTCATCCAACAACAGAATGTATGTTTTG 97736 ||| | | |||| ||||| || || || || | || || || | || |||| | Sbjct 33198 GCAGATGATAACTCGTTGAGCATCTCACGAAGTTCTTTCATTAAGAGCACATAGGTTTCG 33257 Query 97737 GCGTCACGCTCCGCATCGCCCAGCGACGGGTTAGCCCCTTTGCCGCCCGGAAATTCCCAA 97796 | || || | | |||| || |||||||| || |||||||| || ||||||||| Sbjct 33258 CCATC---CTTAGGACCGCCGAGGTTAGGGTTAGCGCCCTTGCCGCCAGGGAATTCCCAA 33314 Query 97797 TCGACGTCGACACCATCAAAAAATTTCCACACTTGCAAAAATTCCTTAACCGACTCTACA 97856 |||| |||||||||||||| ||||||||| || ||||||||||| || | || Sbjct 33315 TCGATATCGACACCATCAAAGAATTTCCACGTCATCAGGAATTCCTTAACTGAATTGACG 33374 Query 97857 AAAACGTTTCTTTTTTCAACGTCGTGCATGAAATAGAACGGGTCCGACAGAGTCCAGCCT 97916 ||| || || || | ||| | | ||| |||| || || | |||||||| ||| Sbjct 33375 AAACGGTCCCTCTTCACTTTGTCATCAAAGAAGAAGAAAGGATCAGCAAGAGTCCAACCT 33434 Query 97917 CCTATTGAAGGAAGAATTTTTAGATGTGGGTTTGCTAATTTCGCCGCCATCAATTGTCCA 97976 || || || || || ||||||| | || | ||| ||| | ||||| ||| || Sbjct 33435 CCAATAGACGGCAGGATTTTTAAGTCAGGTCTGGCTTGCTTCAATGACATCAGTTGACCG 33494 Query 97977 AAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGGTTTTTGTACGGCG 98036 || ||||| ||||| ||||| ||||||| || | |||||||| ||||| || | ||| Sbjct 33495 AAGTTGCCCTTGTAAGGTTCATTCCAAGATGATAATCCCTTTTGTGGTTTCTGGAGAGCG 33554 Query 98037 GCCCACGGATCGTGGATGGCAACTTTGAAATCTTCGCGTCCCCTGCACGATCGTTGCAGA 98096 ||||| ||||||||||||| || ||||| ||||| || || ||||| || ||||||| | Sbjct 33555 GCCCATGGATCGTGGATGGACACCTTGAAGTCTTCTCGACCGCTGCAAGACCGTTGCAAA 33614 Query 98097 GCTTCAAAACTTCCGGGTATTGTTTTGAGGGCGTCGTTTATTCCATCGCCACCGCAGATG 98156 |||| ||||| || ||| || | |||||| || ||||| || || || || Sbjct 33615 GCTTGGAAACTGCCTTCGATTTCCTTCAAACTGTCGTTGATGCCATCTCCCCCACAAATT 33674 Query 98157 GGTATGAAACCGTACAACAAGTGCGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAG 98216 || ||||| ||||| || | |||| | ||||| | |||| |||||| || || || Sbjct 33675 GGGATGAACCCGTATAAAAGATGCGTGAGGTTTGGAATTGGAATTTTGTCCACAGGGAAC 33734 Query 98217 CTGCGCCCGTACACACCCCACTCGACAAAGTACGCAGCGACAATTTT 98263 | || ||||||||||| || || ||||| ||| |||| | ||| Sbjct 33735 TTCCGGGGATACACACCCCATTCTACGAAGTAGGCACCGACTACTTT 33781 >seq27819 Length=1354 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || ||||||| | || || || ||||| || ||| ||||| | Sbjct 1087 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAGACCATCACTTTGGAAGTTGAACCATCT 1146 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| |||||| || ||||| || | ||| || ||| Sbjct 1147 GACACTATCGAGAATGTCAAAGCCAAAATTCAGGACAAAGAGGGGATTCCCCCTGACCAA 1206 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 ||| | ||||||||||| ||||| |||||||||||| | || || | || ||||| Sbjct 1207 CAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGCCGTACACTGTCGGACTACAAC 1266 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || |||||||| ||||| || | || ||| |||| |||||||| Sbjct 1267 ATCCAGAAGGAATCCACTCTGCATTTAGTATTAAGATTGCGAGGAGG 1313 >seq397 Length=962699 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | ||||| || || || ||||| || ||| ||| || || | Sbjct 58666 AATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTTGAGCCATC 58607 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | || | || ||||||| || || ||||| | || ||||| Sbjct 58606 CGATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGCATACCACCTGATCA 58547 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || | || || |||||||| ||||| ||||| ||| | | |||||||| Sbjct 58546 GCAGCGATTGATTTTCGCGGGCAAGCAATTAGAAGACGGACGTACTCTTTCGGATTACAA 58487 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 ||||||||| ||||||||||||||| | || || || ||||| |||||| Sbjct 58486 TATTCAAAAAGAATCTACTCTTCACCTCGTCTTGCGTTTACGTGGAGGG 58438 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| | || || ||||||||||| ||| ||| || | Sbjct 58209 ATGCAGATTTTCGTTAAAACTCTCACCGGTAAAACCATTACTCTCGAGGTGGAGCCTTCT 58150 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || |||||| || ||||| ||| | || ||| ||| Sbjct 58149 GACACCATAGAAAATGTAAAAGCTAAAATTCAAGACAAAGAGGGTATTCCACCAGACCAA 58090 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||||| || ||||| || || |||||||||||| ||| || | || ||||| Sbjct 58089 CAAAGACTGATATTTGCTGGTAAGCAATTGGAAGATGGGCGCACTTTGTCAGACTACAAC 58030 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || || |||||||||||||| | || ||||| Sbjct 58029 ATCCAGAAAGAATCTACTCTTCATTTAGTATTACG 57995 >seq504 Length=80497 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 25149 GATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGAT 25208 || |||||| | ||||||||||| ||||| |||||||||||| | || || | || Sbjct 72775 GACCAACAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGCCGTACACTGTCAGAC 72834 Query 25209 TACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| ||||| || ||||| ||||| || | ||||| |||| ||||||| Sbjct 72835 TACAACATTCAGAAAGAATCCACTCTGCATTTAGTGTTGAGATTGAGAGGAGG 72887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410646717571478