Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq826 95.1 8e-15 >seq826 Length=185846 Score = 95.1 bits (104), Expect = 8e-15 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 97115 CAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCC 97174 |||||| || || |||||| |||||| | ||||| || |||||||| || || || | Sbjct 159443 CAGTGATGTGAGCAATCATATGAGTTAACAAGGAATAACTGGCAATGTTGAATGGAACTC 159384 Query 97175 CTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACAT 97234 | || ||||||||||| |||||| ||||| |||| || | ||||| | |||| Sbjct 159383 CCAGACCCATATCAGCACTTCTTTGGTATAAAAGACATGATAATCTTCCACTTGATACAT 159324 Query 97235 AAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCC 97294 ||||||| || |||||| || || | |||||||| | |||| || ||||| Sbjct 159323 GAAACTGAGCCAGACAATGACAAGGTGGGAGAGCCATTTTACTCAAATCTGAGGGATTCC 159264 Query 97295 AAGCACACAT 97304 | || ||||| Sbjct 159263 ATGCGCACAT 159254 Score = 89.7 bits (98), Expect = 4e-13 Identities = 124/170 (73%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 97453 CCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCC 97512 ||||||||||||||| ||||| | ||||| | | | | || ||||||||| |||||| Sbjct 158932 CCTTCTTCTCTATCAGTAAAACCTAATTTATCAAGAAATGCCCGAGATCCATTAGCATCC 158873 Query 97513 CAAATGTGCACACCAGATGCT-GCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCA 97571 || |||||||| || | || ||||| | || || || || |||||| || | ||| Sbjct 158872 CAGATGTGCACTCC-TTTACTAGCAAGGGCCTTACTATCTGTTGATCCTGAAATCATCCA 158814 Query 97572 CAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGA 97621 || || ||||| | || ||||| ||| |||| ||||||| ||||| Sbjct 158813 CAGCAGCTCTTCTATGACTCCTCTAGTAAAAACTCGTTTAGTTG-TAAGA 158765 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 96964 TTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGCCTGGGA 97023 |||||||||||||| ||| |||| || | ||||| | |||||| ||||| | ||| || Sbjct 159827 TTAAAATCATCAATTGATTCAATTTTGCGCGCAAATTCTAGTGTAGGGAATGACCTAGGT 159768 Query 97024 GTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCT 97083 || || | ||| | | | || | ||||| ||||| | ||| | |||| ||| || Sbjct 159767 TCTCTGGTCAACTGTTGTTTAAGTGGTTCAATATGATTGAGATACACATGAGTATCACCA 159708 Query 97084 AAAGTGTGAATAAATTCTCCAGG 97106 |||||| |||||||| ||||| Sbjct 159707 GTAGTGTGTATAAATTCACCAGG 159685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346657304307890