Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq397 141 1e-28 seq504 123 4e-23 seq27819 122 1e-22 >seq397 Length=962699 Score = 141 bits (156), Expect = 1e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 ||||||||||| ||| | || || |||| || |||||||| || | || |||| || Sbjct 58668 ACAATGCAAATTTTTGTGAAAACTTTAACTGGTAAAACTATCACCTTGGAAGTTGAGCCA 58609 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||||||| ||| ||||| ||||||||||| || ||||| |||||||||||| Sbjct 58608 TCCGATACAATTGAAAATGTAAAAGCAAAAATTCAAGACAAGGAAGGCATACCACCTGAT 58549 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || | | ||||| || || || |||||||| || | || || | ||||| Sbjct 58548 CAGCAGCGATTGATTTTCGCGGGCAAGCAATTAGAAGACGGACGTACTCTTTCGGATTAC 58489 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||||||||||| ||| | || | || || |||||||| || || || Sbjct 58488 AATATTCAAAAAGAATCTACTCTTCACCTCGTCTTGCGTTTACGTGGAGGGAT 58436 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || || || || ||||| || ||| | ||| | || | | Sbjct 58209 ATGCAGATTTTCGTTAAAACTCTCACCGGTAAAACCATTACTCTCGAGGTGGAGCCTTCT 58150 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||| ||||||||||| ||||| ||||| ||||| || ||| Sbjct 58149 GACACCATAGAAAATGTAAAAGCTAAAATTCAAGACAAAGAGGGTATTCCACCAGACCAA 58090 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || || ||||| || || ||||| || ||| | || || || ||| || || Sbjct 58089 CAAAGACTGATATTTGCTGGTAAGCAATTGGAAGATGGGCGCACTTTGTCAGACTACAAC 58030 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | ||||| || |||||| | || ||||| || Sbjct 58029 ATCCAGAAAGAATCTACTCTTCATTTAGTATTACGTCTCCGTGGTGGCAT 57980 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || |||| || || || || |||||||| || | ||| | || | | Sbjct 58437 ATGCAGATCTTCGTAAAAACCCTCACTGGTAAAACTATTACCCTTGAGGTGGAGCCGTCT 58378 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | || || |||||||| || |||||||| || || ||||| Sbjct 58377 GATACCATCGAAAACGTGAAGGCTAAGATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 58318 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || || || |||||||| || | || || | || ||| | ||| || ||| Sbjct 58317 CAACGCCTGATCTTCGCAGGAAAGCAGCTCGAAGACGGACGTACACTTTCAGACTACAAT 58258 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||| || | || | ||| ||||| | || || || || Sbjct 58257 ATTCAAAAAGAATCTACACTTCACCTTGTTCTACGTCTTCGTGGAGGGAT 58208 >seq504 Length=80497 Score = 123 bits (136), Expect = 4e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | |||||||| || ||||| ||||| || | || |||| || Sbjct 73116 AATGCAGATCTTTGTCAAGACACTCACTGGCAAGACTATTACACTGGAAGTTGAGCCATC 73175 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||| |||||||| || || ||||| || Sbjct 73176 GGATACAATTGAGAATGTTAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCTGACCA 73235 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | ||||| ||||| || || || | || ||| | || || | || || || Sbjct 73236 ACAACGTCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGACGCACTCTCTCCGACTACAA 73295 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| ||| | ||||| || | ||| || |||||||||| Sbjct 73296 CATCCAGAAGGAATCGACTCTTCATTTAGTACTTCGTCTAAGAGGTGGTAT 73346 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||||| || || || || || || | ||| |||| || | Sbjct 73896 ATGCAGATCTTTGTGAAGACACTCACCGGAAAGACCATCACATTGGAGGTTGAGCCATCT 73955 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | || ||||||||||| ||||| || || || ||||| ||| Sbjct 73956 GACACTATTGAAAATGTGAAGGCCAAAATTCAAGACAAAGAGGGGATTCCCCCTGACCAA 74015 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | ||||| ||||| || || ||||| || || | || ||| | || || || Sbjct 74016 CAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGACGGCCGTACACTGTCGGACTACAAC 74075 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| ||||||| || || | || |||| ||||| Sbjct 74076 ATCCAGAAAGAATCCACTCTGCATTTAGTATTGAGATTGAGAGGAGGTAT 74125 Score = 104 bits (114), Expect = 4e-17 Identities = 169/242 (70%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||||| || ||||| ||||| || | || |||| | Sbjct 74124 ATGCAGATCTTTGTCAAGACACTCACTGGCAAGACTATTACACTGGAAGTTGAGCCTTCG 74183 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| ||||| ||||| ||||| || || || ||||| ||| Sbjct 74184 GATACAATTGAGAATGTGAAAGCTAAAATCCAAGACAAAGAGGGGATTCCTCCTGACCAA 74243 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||||||||| || || || | || ||| | || || | || || || Sbjct 74244 CAGCGACTTATTTTTGCCGGCAAGCAGCTTGAAGATGGCCGCACCCTCTCCGACTACAAC 74303 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAAAATTC 124777 || || || ||||| ||| |||||||||| | | | | ||||| ||||| ||||| Sbjct 74304 ATCCAGAAGGAATCCACTCTGCATTTGGTACTCAGACTTAGGGGTGGAAATTAATAATTC 74363 Query 124778 AT 124779 || Sbjct 74364 AT 74365 >seq27819 Length=1354 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | |||||||| || ||||| || || || |||| |||| || Sbjct 631 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACCATCACATTAGAAGTTGAGCCATCA 690 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || |||||| ||| |||| ||||| ||||| ||||| || || || ||||| ||| Sbjct 691 GACACAATTGAGAATGTAAAGGCTAAAATCCAAGACAAAGAGGGGATTCCTCCTGACCAA 750 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||||||||| || || |||||||| ||| | || || | || || || Sbjct 751 CAGCGACTTATTTTTGCCGGCAAGCAATTAGAAGATGGACGCACTCTTTCCGACTACAAC 810 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| ||| | ||||| || || | || ||||| ||||| Sbjct 811 ATTCAGAAGGAATCCACTCTTCATTTAGTATTGAGATTGCGAGGAGGTAT 860 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || || || ||| | || ||||| || | Sbjct 175 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAGACCATCACTTTGGAAGTTGAACCATCT 234 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| |||||||| || || || || || || ||||| || Sbjct 235 GATACAATTGAAAATGTTAAAGCCAAAATTCAGGACAAGGAGGGAATTCCCCCTGACCAG 294 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || || || || || || || || ||| | || || | ||||||||| Sbjct 295 CAGCGTCTCATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTCTCCGATTATAAT 354 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||||||||||| || || | || ||||| ||||| Sbjct 355 ATCCAGAAAGAATCCACTTTGCATTTAGTATTGAGATTGCGAGGAGGTAT 404 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || || || || ||| | || ||||| || | Sbjct 859 ATGCAGATCTTCGTTAAGACCCTCACCGGGAAGACCATCACTTTGGAAGTTGAACCATCT 918 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | ||| |||||||| || || || || || || ||||| || Sbjct 919 GATACAATTGAAAATGTTAAAGCCAAAATTCAGGACAAGGAGGGAATTCCCCCTGACCAG 978 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || || || || || || || || ||| | || || | ||||||||| Sbjct 979 CAGCGTCTCATCTTCGCTGGCAAGCAGTTGGAAGATGGCCGCACCCTCTCCGATTATAAT 1038 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || |||||||| || | ||| || |||||||||| Sbjct 1039 ATCCAGAAAGAATCCACCTTGCATTTAGTACTTCGTCTAAGAGGTGGTAT 1088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755172921193600