Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq18 113 7e-20 seq397 95.1 2e-14 seq154 87.8 3e-12 >seq18 Length=639756 Score = 113 bits (124), Expect = 7e-20 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 10485 TTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATA 10544 |||||| |||| |||||| || ||||| || |||||| |||| ||||| ||||| || Sbjct 268665 TTTATTT-TATTTCAGCTGGTGTTATTGATGAGGATTATCGAGGGAATGTAGGAGTTGTA 268607 Query 10545 TTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTA 10604 | || ||||| || || |||| ||| | | || | ||| |||||||| ||||| | Sbjct 268606 CTTTTCAATCACTCAGATCAAGAATTTGCAGTTAAAAAAGGTGATAGAATTGCTCAACTC 268547 Query 10605 ATATGTGAAAAAATTTTATATCCTAAAATGTTAAAAGTCGATAGTTTATCAGAAACAAAA 10664 ||||| |||| ||| || |||||| | | || |||| || |||||||| ||| Sbjct 268546 ATATGCGAAAGAATATTCTATCCTGACTTATTGGAAGTTTCAGACTTGTCAGAAACTAAA 268487 Query 10665 AGATCTGATTTTGGTTTTGGATCTACTGG 10693 || || ||| ||||||||||| || || Sbjct 268486 AGGTCAGATGGAGGTTTTGGATCAACGGG 268458 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/140 (75%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 10362 AGTGCATATGATTATATTGTTTCAGC-ACATGATAAAAAATTAATAAAAACTGATTTAAT 10420 |||||||||||||| | || | || | | || || ||||||||||||| ||| || Sbjct 269086 AGTGCATATGATTACACAGTACCTGCTAGAGGA-AAGGAATTAATAAAAACAGATCTACA 269028 Query 10421 TATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAA 10480 || ||| | |||| |||||||||| |||| | ||||| |||||| |||||| | || Sbjct 269027 AATTGAATTGCCTAGTGGATGTTATGGAAGAGTTGCTCCTCGATCTGGTTTAGCAGTTAA 268968 Query 10481 TAAATTTATTGATATTGGAG 10500 || ||||| ||| |||||| Sbjct 268967 AAACTTTATAGATGTTGGAG 268948 >seq397 Length=962699 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || | |||||| ||||| | |||||||||||| || || || ||||| Sbjct 57983 CCACCACGGAGACGTAATACTAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGAC 58042 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || ||||| || |||||||| |||| |||||| || || || ||| Sbjct 58043 AAAGTGCGCCCATCTTCCAATTGCTTACCAGCAAATATCAGTCTTTGTTGGTCTGGTGGA 58102 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||| ||||| Sbjct 58103 ATACCCTCTTTGTCTTG 58119 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/199 (67%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 |||||||||||| ||||| ||||| |||||||| | | || |||||||| || || Sbjct 58468 AGTAGATTCTTTTTGAATATTGTAATCCGAAAGAGTACGTCCGTCTTCTAATTGCTTGCC 58527 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNN 146199 || |||||||||| |||||||| || || || ||||| || ||||| Sbjct 58528 CGCGAAAATCAATCGCTGCTGATCAGGTGGTATGCCTTCCTTGTCTTGAATTTTTGCTTT 58587 Query 146200 NNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGT 146259 ||||| || || ||||| | ||||| |||||||| ||||| || Sbjct 58588 TACATTTTCAATTGTATCGGATGGCTCAACTTCCAAGGTGATAGTTTTACCAGTTAAAGT 58647 Query 146260 TTTAATGAATATTTGCATT 146278 ||| | || ||||||||| Sbjct 58648 TTTCACAAAAATTTGCATT 58666 >seq154 Length=1330714 Score = 87.8 bits (96), Expect = 3e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 23989 ATTACTTTTTGAATAAAATCTTTGCCTTTTACAAGTTTAACATAATCACATTTATCAAAC 24048 || ||||| |||| | ||| |||||| || || | ||| ||| | ||| ||||||| Sbjct 117445 ATAACTTTCTGAACGTAGTCTCGGCCTTTCACCAGCTGAACGTAAGCGCATCGATCAAAC 117386 Query 24049 CATCTTGCGTGTTGTATCCAAGGATCATCGTCTGTTTCCCATTTATTTAAACCACCATCA 24108 || | ||||| ||| ||| || | ||||| | ||||| | || | ||| || || Sbjct 117385 CACCGCGCGTGCTGTTCCCACGGGACGTCGTCGTTCTCCCAGTCTTTCAGACCTCCGTCG 117326 Query 24109 CAATAAAAGCATTTAACTTTATCACTTTTTCCAGTATAAAAGAATCCAGCTTCTGC 24164 || || || |||||| |||||| | || || || ||||||||||| ||||| || Sbjct 117325 CAGTAGAAACATTTAGTTTTATCCCCTTGCCCGGTGTAAAAGAATCCGGCTTCCGC 117270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743247791363840