Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq852 212 5e-50 seq27819 98.7 8e-16 seq504 98.7 8e-16 seq397 95.1 9e-15 >seq852 Length=562639 Score = 212 bits (234), Expect = 5e-50 Identities = 359/516 (70%), Gaps = 8/516 (2%) Strand=Plus/Plus Query 91441 TTCGGATCGCCAATGGCCGGATTAGCGCCTTTACCGCCCGGAAATTCCCAATCAATATCT 91500 || ||| |||| | | || |||||||| || ||||| || ||||||||||| ||||| Sbjct 33264 TTAGGACCGCCGAGGTTAGGGTTAGCGCCCTTGCCGCCAGGGAATTCCCAATCGATATCG 33323 Query 91501 ACACCGTCAAAAAATTTCCAAACTTGCAAAAATTCTTTAACCGAATCAACGAACACGTTT 91560 ||||| ||||| |||||||| || ||||| ||||| |||| ||||| ||| | Sbjct 33324 ACACCATCAAAGAATTTCCACGTCATCAGGAATTCCTTAACTGAATTGACGAA-ACGGTC 33382 Query 91561 CTTCGTTTGACATCGTGCATAAAATA----GAACGGGTCCGACAAAGTCCAGCCACCGAT 91616 | || || || | || ||| ||| | ||| || || | | |||||| || || || Sbjct 33383 CCTC--TTCACTTTGT-CATCAAAGAAGAAGAAAGGATCAGCAAGAGTCCAACCTCCAAT 33439 Query 91617 GGACGGTAAAACTTTTAAATGCGGGTTGGCCAACTTGGCGGCCATTATCTGACCAAAGTT 91676 ||||| | | |||||| | || |||| ||| | ||| | ||||| ||||| Sbjct 33440 AGACGGCAGGATTTTTAAGTCAGGTCTGGCTTGCTTCAATGACATCAGTTGACCGAAGTT 33499 Query 91677 GCCCTTGTAAGGCTCGTTCCAAGCGGATACACCTTTTTGTGGTTTTTGTATGGCTGCCCA 91736 |||||||||||| || ||||||| |||| || ||||||||||| || | || ||||| Sbjct 33500 GCCCTTGTAAGGTTCATTCCAAGATGATAATCCCTTTTGTGGTTTCTGGAGAGCGGCCCA 33559 Query 91737 CGGATCGTGTATGGAAACTTTAAAATCATCGCGTCCTTTGCACGATCGTTGCAAATTTTC 91796 |||||||| ||||| || || || || || || || |||| || ||||||||| || Sbjct 33560 TGGATCGTGGATGGACACCTTGAAGTCTTCTCGACCGCTGCAAGACCGTTGCAAAGCTTG 33619 Query 91797 AAAACTACCAGGTATTGTTTTGAGGGCATCGTTTAATCCATCGCCTCCGCAAATGGGTAT 91856 ||||| || ||| || | ||||| | ||||| || || ||||| || || Sbjct 33620 GAAACTGCCTTCGATTTCCTTCAAACTGTCGTTGATGCCATCTCCCCCACAAATTGGGAT 33679 Query 91857 AAAACCGTACAACAGATGGGACAAATTTGGCAGCGGCACCTTGTCGATTGGAAAGTTGCG 91916 || ||||| || ||||| | | ||||| | || | ||||| | || || || || Sbjct 33680 GAACCCGTATAAAAGATGCGTGAGGTTTGGAATTGGAATTTTGTCCACAGGGAACTTCCG 33739 Query 91917 TCCGTACACGCCCCATTCAACAAAGTACGCGGCGAC 91952 ||||| |||||||| || ||||| || |||| Sbjct 33740 GGGATACACACCCCATTCTACGAAGTAGGCACCGAC 33775 >seq27819 Length=1354 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || | ||| | ||| | || || || ||||| || || ||||||||||| | | Sbjct 1313 CCTCCTCGCAATCTTAATACTAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCCGAC 1254 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||||||| ||||| ||| ||||||| | |||||| || ||| Sbjct 1253 AGTGTACGGCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGA 1194 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || || || ||||| | || ||||| | | | ||||||| || || Sbjct 1193 ATCCCCTCTTTGTCCTGAATTT-TGGCTTTGACATTCTCGATAGTGTCAGATGGTTCAAC 1135 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| | || ||||| | ||||| ||||| || ||||| Sbjct 1134 TTCCAAAGTGATGGTCTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 1087 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || | ||| | |||||| | |||||||||||||| || || ||||||||||||| Sbjct 629 CCACCTCTTAGACGAAGTACTAAATGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAG 570 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||||||||| ||||| ||| ||||||| | ||||| || ||| Sbjct 569 AGGGTGCGGCCATCTTCCAATTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCAGGGGGA 510 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||||| | || || || | | ||| ||||| ||||| Sbjct 509 ATTCCTTCCTTGTCCTGAATTT-TAGCTTTCACATTTTCAATTGTGTCCGATGGCTCAAC 451 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || | ||||| || | || || || || || ||||| Sbjct 450 TTCTAATGTAATAGTCTTGCCAGTAAGGGTCTTAACGAAGATCTGCAT 403 >seq504 Length=80497 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | | ||| | ||| | || || || |||||||| || ||||||||||| | | Sbjct 74122 CCTCCTCTCAATCTCAATACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGAC 74063 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||||||||| ||||| ||| ||||||| | |||||| || ||| Sbjct 74062 AGTGTACGGCCGTCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGA 74003 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || || || || ||||| ||| || | | ||| ||||||| ||||| Sbjct 74002 ATCCCCTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATAGTGTCAGATGGCTCAACC 73943 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | |||||| | || ||||| | ||| || ||||| || ||||| Sbjct 73942 TCCAATGTGATGGTCTTTCCGGTGAGTGTCTTCACAAAGATCTGCAT 73896 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||| | || ||| | |||||||| |||| Sbjct 73091 TGCAGAGTGGATTCCTTCTGGATGTTGTAGTCCGACAGTGTACGGCCATCTTCCAGTTGT 73032 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || ||||| ||||||| | ||||| || ||| | || ||||| || ||||| | Sbjct 73031 TTACCCGCGAAGATAAGACGCTGTTGGTCAGGGGGAATTCCCTCCTTGTCCTGAATTT-T 72973 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || ||||| | ||| ||||||| ||||| ||| | || || | ||||| || Sbjct 72972 GGCTTTGACATTCTCAATAGTGTCAGATGGCTCAACTTCCAGTGTAATAGTCTTGCCAGT 72913 Query 18302 CAATGTTTTTACAAAAATTTGCATT 18326 | ||| || ||||| || |||||| Sbjct 72912 GAGTGTCTTGACAAAGATCTGCATT 72888 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || |||||||| |||||||||||||| | || ||| | |||||||||||| Sbjct 72863 TGCAGAGTGGATTCTTTCTGAATGTTGTAGTCTGACAGTGTACGGCCATCTTCCAATTGC 72804 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| ||||||| | |||||| || || | || || || || ||||| | Sbjct 72803 TTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGAATCCCCTCTTTGTCCTGAATTT-T 72745 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | ||| || || ||||| ||| | || || | ||||| || Sbjct 72744 AGCTTTCACATTTTCAATTGTATCCGATGGCTCAACTTCTAATGTAATAGTCTTGCCAGT 72685 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | ||| || ||||| || ||||| Sbjct 72684 GAGTGTCTTCACAAAGATCTGCAT 72661 >seq397 Length=962699 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| |||| | | || | |||||| || |||||||||||||| ||||| || | Sbjct 58439 CCTCCACGTAAACGCAAGACGAGGTGAAGAGTAGATTCTTTTTGAATATTGTAATCCGAA 58498 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||| ||||| |||||||| | || | || || ||||| || Sbjct 58499 AGAGTACGTCCGTCTTCTAATTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGTGGT 58558 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTG-ACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||| || ||||| |||||| || | | ||| || || ||||| Sbjct 58559 ATGCCTTCCTTGTCTTGAATTT-TTGCTTTTACATTTTCAATTGTATCGGATGGCTCAAC 58617 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| |||| || || || ||||| ||||||||||||||| Sbjct 58618 TTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCATT 58666 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||||| || || ||||| || ||||| ||||||| || || || ||||||| Sbjct 57089 ACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGACAAAGTGCGACCATCTTCC 57148 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 |||||||| ||||| ||||||| | || ||||| ||| | ||| ||||| || Sbjct 57149 AATTGTTTACCCGCGAAGATAAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 57208 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | | | | |||||| || || || | ||| ||| |||| Sbjct 57209 ATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGTTCCACCTCTAAGGTTATGGTTTTA 57268 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||| ||||| ||||| || ||||| Sbjct 57269 CCAGTCAGGGTTTTAACAAAGATCTGCAT 57297 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || || || ||||| ||||||||||||| || || || ||||||| Sbjct 56405 ACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGACCATCTTCC 56464 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | |||||| |||||| | || | ||| || || || || | ||||||||| || Sbjct 56465 AGTTGTTTACCCGCAAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCCTGG 56524 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||| || | | | | ||||| || || || | ||| ||| |||| Sbjct 56525 ATCTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACCTCCAAGGTTATGGTTTTA 56584 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||||| ||||| ||||| || ||||| Sbjct 56585 CCGGTCAGGGTTTTAACAAATATCTGCAT 56613 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || |||||||| || ||||||||||| | || || | |||||||||||| Sbjct 58007 TGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGCCCATCTTCCAATTGC 58066 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| | || ||||||||||| || || | || || || || ||||| | Sbjct 58067 TTACCAGCAAATATCAGTCTTTGTTGGTCTGGTGGAATACCCTCTTTGTCTTGAATTT-T 58125 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || || || | | | | |||||| ||||| || | || ||| |||| ||||| Sbjct 58126 AGCTTTTACATTTTCTATGGTGTCAGAAGGCTCCACCTCGAGAGTAATGGTTTTACCGGT 58185 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | ||||| || ||||| ||||| Sbjct 58186 GAGAGTTTTAACGAAAATCTGCAT 58209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379205408684865