Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq852 259 4e-64 seq397 116 3e-21 seq504 87.8 2e-12 >seq852 Length=562639 Score = 259 bits (286), Expect = 4e-64 Identities = 664/998 (67%), Gaps = 35/998 (4%) Strand=Plus/Plus Query 35862 GCGAAATGTTTTTAGCAATCTGTCTGTAGTCGACCACGCCGTTTTCCCATGTACCCGTGA 35921 ||| ||| | || ||||||| |||||| || ||||| |||| || ||||||||| ||| Sbjct 32791 GCGCAATTTCATTCGCAATCTCTCTGTAATCCACCACACCGTCTTGCCATGTACCTTTGA 32850 Query 35922 TCGGTCCGACGGCTACGCCACTGAATGGATTGTCACTGTTGTAGTTGTGGACGCCCGTCC 35981 || || || ||| |||| ||| |||| | | ||| ||| || || |||| Sbjct 32851 CAGGACCAGAAGCATTGCCTGTGAAGGGAATGTCGTTTTCGTACCCGTGAACACCAGTCC 32910 Query 35982 AACCGCGGCCGTACATTGCTACGCCCAACACGAGtttttttGGATTCACTCGTTGCGCGA 36041 | || || |||||||| || || || | |||| || || ||||| |||| ||| || | Sbjct 32911 ATCCACGTCCGTACATAGCAACACCAACTACGACCTTCTTCGGATTGACTCCTTGAGCTA 32970 Query 36042 GCAAAGCGTCCACGGCCACGTTGGCGGTGTACGGTTCGTTAGGTTTCCACGCGGAACCGT 36101 ||| | || | | | | ||||| | ||| ||||| ||||| || | | ||| Sbjct 32971 ACAAGTATTTAACACCGAAATCAGTCGTGTATGTTTCCTTAGGATTCCAGGCTGGAGCGT 33030 Query 36102 ACAGTGCCGTCTGATGACCGAGATCGGTATTAGACCAAGCTCCTTTGAAATCATAACTCA 36161 |||| | ||||| ||||| || | || ||||| ||||| ||||| || || ||| Sbjct 33031 ACAGAGATGTCTGGTGACCTAGGGTGTCGTTCGACCACGCTCCCTTGAAGTCGTAGTTCA 33090 Query 36162 TCACGAAAATTTTATCTAAATACTGTTGTGCTCGGTCGTAATTAACCGCGGCGATCTTGT 36221 | | ||| || | || | || | ||||| || ||| | ||| | ||||||| Sbjct 33091 TGAAGAAGATGTGGTCCATGTAGTTCTGTGCGCGACTGTAGTCGACCACTTGAATCTTGT 33150 Query 36222 CTATGCCAGCGCTAATCGCTGTGGTGAGTTCTAAAGTACGATTCGT-----TTGTATTTG 36276 | ||||| || || |||| || || || |||| ||| | | | | || Sbjct 33151 CCCAACCAGCACTGATAGCTGAAGTTAGCTC----GTAC--TTCTTGCCAGTAGCAGATG 33204 Query 36277 A--ACTTGATCGAGCATGGCGCGCAATTCGCCCAATAA-AGCGATATACGTGTTATTGTC 36333 | ||| | | |||||| | || | ||| || ||| ||| | ||| || | | Sbjct 33205 ATAACTCGTT-GAGCATCTCACGAAGTTCTTTCATTAAGAGC-ACATAGGTTT------C 33256 Query 36334 GCGTTCCACAT---CGCCAACGTTTGGATTGGCGCCTTTGCCGCCCGGAAATTCCCAATC 36390 || ||| | |||| | ||| || || ||||| |||||||| || ||||||||||| Sbjct 33257 GCCATCCTTAGGACCGCCGAGGTTAGGGTTAGCGCCCTTGCCGCCAGGGAATTCCCAATC 33316 Query 36391 AATATCGATGCCGTCGAAAAATTTCCATGTCAACACAAATTCACGCACGGATTCGACAAA 36450 ||||||| || || || |||||||| |||| || ||||| || || | ||| || Sbjct 33317 GATATCGACACCATCAAAGAATTTCCACGTCATCAGGAATTCCTTAACTGAATTGACGAA 33376 Query 36451 AATTTGTCGCGTTCGCGCATCGTGCAT--ATGAT--AGAAGGGATCGGACAGTGTCCAAC 36506 | | | | | | | | || ||| | || |||| ||||| | || ||||||| Sbjct 33377 ACGGTCCCTCTT---CACTTTGT-CATCAAAGAAGAAGAAAGGATCAGCAAGAGTCCAAC 33432 Query 36507 CGCCGATTGATGCCAACACTTTTAGATTGGGATTGGCCAATTTTGCTGCCATTAATTGAC 36566 | || || || | || | ||||| | || |||| || || ||| | ||||| Sbjct 33433 CTCCAATAGACGGCAGGATTTTTAAGTCAGGTCTGGCTTGCTTCAATGACATCAGTTGAC 33492 Query 36567 CAAAATTGCCTTTGTAGGGTTCGTTCCATGC-GCTAACGCCTGTTTGTGGTTTTTGGAGC 36625 | || ||||| ||||| ||||| ||||| | | ||| ||| |||||||||| ||||| Sbjct 33493 CGAAGTTGCCCTTGTAAGGTTCATTCCAAGATGATAATCCCT-TTTGTGGTTTCTGGAGA 33551 Query 36626 GCCGCCCACGGATCGTGTATGGAAACTTTAAAATTGTCCCTGCCAGCGCACGATCTTTGC 36685 || ||||| |||||||| ||||| || || || | || | || ||| || | |||| Sbjct 33552 GCGGCCCATGGATCGTGGATGGACACCTTGAAGTCTTCTCGACCGCTGCAAGACCGTTGC 33611 Query 36686 AACGCTTCAAAACTCCCCGTGATAGATTTTAAACTGTCGTTTATACCGTCACCGCCGCAA 36745 || |||| ||||| || ||| || ||||||||||| || || || || || ||| Sbjct 33612 AAAGCTTGGAAACTGCCTTCGATTTCCTTCAAACTGTCGTTGATGCCATCTCCCCCACAA 33671 Query 36746 ATCGGTATAAATCCGTATAAAATGTGCGAAAGGTTCGGCGTGGGCACTTTGTCCACGGGA 36805 || || || || |||||||||| |||| ||||| || | || | ||||||||| || Sbjct 33672 ATTGGGATGAACCCGTATAAAAGATGCGTGAGGTTTGGAATTGGAATTTTGTCCACAGGG 33731 Query 36806 AAAGATCGACCGTAAACGCCCCATTCGACAAAATAGGC 36843 || || || || |||||||| || || ||||| Sbjct 33732 AACTTCCGGGGATACACACCCCATTCTACGAAGTAGGC 33769 >seq397 Length=962699 Score = 116 bits (128), Expect = 3e-21 Identities = 168/236 (71%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 |||||||||||||||||||||| | ||||| ||||| |||||| | || || ||| | Sbjct 56614 CATGCAGATATTTGTTAAAACCCTGACCGGTAAAACCATAACCTTGGAGGTGGAACCTTC 56555 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | |||| ||| |||| || || | || |||||| | || ||||| Sbjct 56554 CGACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCA 56495 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || || | |||||| ||||||||||||||| ||| || ||| |||| Sbjct 56494 GCAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGTCGCACTCTGTCCGACTACAA 56435 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGTCAATCAA 25066 ||| || || ||| |||| || || || || || || | ||||| || |||| || Sbjct 56434 CATCCAAAAGGAGTCCACTCTCCACTTGGTTTTGCGTCTTCGCGGTGG-CAATTAA 56380 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| |||||||||||| | || || ||||| || ||| | || || ||| | Sbjct 56842 CATGCAGATCTTTGTTAAAACCCTGACTGGTAAAACCATCACCTTGGAGGTGGAACCTTC 56783 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | |||| ||| |||| || ||| | ||||||||| | || ||||| Sbjct 56782 TGACACCATTGAAAATGTGAAGGCCAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 56723 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| ||| | || | ||||| ||||||||||||||| ||| || ||| || | Sbjct 56722 GCAGCGTCTTATCTTCGCGGGTAAACAACTGGAAGATGGTCGCACTTTGTCCGACTATAA 56663 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTG 25041 ||| ||||||||| |||| |||||| | ||| Sbjct 56662 CATCCAGAAAGAGTCCACCCTTCATCTGGTG 56632 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| |||||||||||| | || || ||||| |||||| | || || ||| | Sbjct 57298 CATGCAGATCTTTGTTAAAACCCTGACTGGTAAAACCATAACCTTAGAGGTGGAACCTTC 57239 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | | |||| ||| |||| || || | || || ||| | || || || Sbjct 57238 CGACACTATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 57179 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| ||| | || | ||||| |||||| |||||||| ||| || ||| || | Sbjct 57178 GCAGCGTCTTATCTTCGCGGGTAAACAATTGGAAGATGGTCGCACTTTGTCCGACTATAA 57119 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 ||| ||||||||| |||| |||||| | ||||| || Sbjct 57118 CATCCAGAAAGAGTCCACCCTTCATCTGGTGTTGCG 57083 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| |||||||||||| | ||||| ||||| || ||| | || || || | Sbjct 57754 CATGCAGATCTTTGTTAAAACCCTGACCGGTAAAACCATCACCTTGGAGGTGGAGCCTTC 57695 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | |||| ||| |||| || || | || |||||| | || ||||| Sbjct 57694 TGACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCA 57635 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| ||| | || | ||||| ||||||||||||||| ||| || || || | Sbjct 57634 GCAGCGTCTTATCTTCGCGGGTAAACAACTGGAAGATGGTCGCACTTTGTCTGACTATAA 57575 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTG 25041 ||| ||||||||| |||| |||||| | ||| Sbjct 57574 CATCCAGAAAGAGTCCACCCTTCATCTGGTG 57544 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| |||||||||||| | ||||| ||||| || ||| | || || ||| | Sbjct 57526 CATGCAGATCTTTGTTAAAACCCTGACCGGTAAAACCATCACCTTGGAAGTGGAACCTTC 57467 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 |||| | |||| ||| |||| || ||| | ||||||||| | || || || Sbjct 57466 TGACACCATTGAAAATGTGAAGGCCAAGATTCAGGACAAAGAAGGCATTCCCCCAGATCA 57407 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| || | || | || || |||||||| |||||| || || ||| || | Sbjct 57406 GCAGCGACTTATCTTCGCTGGTAAACAACTAGAAGATGGGCGCACATTGTCCGACTATAA 57347 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 ||| ||||||||| |||| |||||| | || || || Sbjct 57346 CATCCAGAAAGAGTCCACCCTTCATCTGGTATTGCG 57311 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24831 CATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAG 24890 ||||||||| |||||||||||| | || || ||||| || ||| | || || ||| | Sbjct 57070 CATGCAGATCTTTGTTAAAACCCTGACTGGTAAAACCATCACCTTGGAGGTGGAACCTTC 57011 Query 24891 CGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCA 24950 ||||| | |||| ||| |||| || || | || |||||| | || ||||| Sbjct 57010 CGACACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGACCA 56951 Query 24951 GCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAG 25010 ||| | || || | ||| || ||||| |||||||| ||| || || || | Sbjct 56950 GCAGAGATTGATTTTTGCAGGTAAACAGTTGGAAGATGGTCGCACTTTGTCTGACTATAA 56891 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 ||| |||||||| |||| |||||| | ||||| || Sbjct 56890 CATCCAGAAAGAATCCACCCTTCATCTGGTGTTGCG 56855 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || |||||||| | ||||| ||||| || || |||| || || | Sbjct 58209 ATGCAGATTTTCGTTAAAACTCTCACCGGTAAAACCATTACTCTCGAGGTGGAGCCTTCT 58150 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| |||||| ||| || | |||||| | ||||| || | || ||||| Sbjct 58149 GACACCATAGAAAATGTAAAAGCTAAAATTCAAGACAAAGAGGGTATTCCACCAGACCAA 58090 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | | |||| ||| || || ||| |||||||| ||| || || |||| | Sbjct 58089 CAAAGACTGATATTTGCTGGTAAGCAATTGGAAGATGGGCGCACTTTGTCAGACTACAAC 58030 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACG 25046 || |||||||| | || ||||||||||| ||||| Sbjct 58029 ATCCAGAAAGAATCTACTCTTCATTTAGTATTACG 57995 >seq504 Length=80497 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGA---ATCG 24888 |||||||| ||||| || || | || ||||| || || || | || || || |||| Sbjct 72661 ATGCAGATCTTTGTGAAGACACTCACTGGCAAGACTATTACATTAGAAGTTGAGCCATCG 72720 Query 24889 AGCGACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGAC 24948 || | | |||| ||| || | |||||| | ||||| || | || |||| Sbjct 72721 ---GATACAATTGAAAATGTGAAAGCTAAAATTCAGGACAAAGAGGGGATTCCTCCTGAC 72777 Query 24949 CAGCAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTAC 25008 || |||||| | || | ||| ||||| ||| |||||||| | || || || ||| Sbjct 72778 CAACAACGTCTTATCTTTGCCGGCAAGCAATTGGAAGATGGCCGTACACTGTCAGACTAC 72837 Query 25009 AGCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGG 25058 | ||| |||||||| |||| || ||||||||||| ||||| | ||||| Sbjct 72838 AACATTCAGAAAGAATCCACTCTGCATTTAGTGTTGAGATTGAGAGGAGG 72887 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || ||| | || ||||| || || || | || || || | | Sbjct 72433 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACTATTACACTGGAAGTTGAGCCATCC 72492 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | | || | ||| || | |||||| | || ||||| | || ||||||| Sbjct 72493 GACACTATCGAGAATGTCAAAGCCAAAATTCAGGACAAGGAAGGAATTCCCCCTGACCAG 72552 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||| | || | || || ||||||||||||||| ||| | ||| |||| Sbjct 72553 CAGCGTCTTATCTTCGCCGGTAAACAACTGGAAGATGGACGCACTCTCTCCGACTACAAT 72612 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| || |||| ||||||||||| | || || | |||||| Sbjct 72613 ATCCAGAAGGAATCCACTCTTCATTTAGTACTTCGTCTGAGAGGAGGT 72660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418151174855840