Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq28624 547 8e-151 seq6 91.5 2e-13 >seq28624 Length=432676 Score = 547 bits (606), Expect = 8e-151 Identities = 1202/1778 (68%), Gaps = 42/1778 (2%) Strand=Plus/Minus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 ||||||||||||| | ||||||||||| || | ||| |||||||| ||||| | | Sbjct 59682 GTGAATTGAATGGCGTTTGCGGCGGGTTTCGTCCGCAAATAATACATTCCAGTTTTCAAA 59623 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | |||| ||| ||||| || || | ||| ||| | || || || | Sbjct 59622 CCCATCTTCCAAGCGTGGAAATGAATTGATGTCAATTTACCGTAATTTGGCTCAGCAACG 59563 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 || || || | ||||| ||||||||||| || || || |||||||||||||| | || Sbjct 59562 TGAATGTTAAACGATTGGCTTTGATCGATAAAAGCACCTCTGTCTGCAGCCATCTGAATT 59503 Query 62226 ATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 62284 | || || || || ||||| | ||||| || | ||| || | |||||| || | Sbjct 59502 GTAGTTTTGACTGATATCTCCCATACTGTTTTGTATAGCTCCCTGA-TATCTTTCGGTAT 59444 Query 62285 GTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATT 62341 || |||| |||||||| ||| || || || |||||| || || |||| Sbjct 59443 ACTTTCAATATTTTGAATGGAGCCATTATTGTGAATTATAAGATTCTTCATATCGTCATC 59384 Query 62342 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCC 62401 ||| | | || || ||| ||| ||| ||||| | || || || |||||||| || Sbjct 59383 CCACAGCTCGGCCTGTGTCAAATCTCGAAGAAGATGGTGATTTACGACCTGGAATTCGCC 59324 Query 62402 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCC 62461 ||| || ||||| || || ||||| || |||| || | |||||||| || || Sbjct 59323 AGATAAAACTCTGCGCTGATATATATTTGAAGTGAACGGCTCAAAGGACTCATTGTTACC 59264 Query 62462 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62521 | |||||| ||||| || || || ||||| || || | || | |||||| | ||| Sbjct 59263 AAGAATTTGTGCAGTAGAAGCTGTAGGCATTGGAGCTAGTAACAGCGAATTTCTTAAACC 59204 Query 62522 GTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG-------TA 62574 || | || ||||| ||||| ||| | ||| ||||| || |||| || | Sbjct 59203 GTGTTTTGCTATTTTTTCTTTGAGAGTTGTCCAGTTCCATAGGTCCGTTGGCGTTTTCTC 59144 Query 62575 CAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTA 62633 | ||| |||||| | |||||| ||||| || | | | ||| |||||| | Sbjct 59143 CCACATATC-------ATATTGCAAAATACCCTTACTTGCAGGGCTA-CCTTCATATGAA 59092 Query 62634 TCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATG 62693 ||||| || | || ||||||| || ||| || || |||||||| || |||||||| Sbjct 59091 CTGTATGGGCCATATTTTTCAGCTAATTCACAGCTTGCTTCTAATGCTCCATAATAAATA 59032 Query 62694 GTTTCAAAGATCTTCTTATTTAGATCTTGT-GCTTCCGGGCTATCAAATGGATAATTTAA 62752 || ||||| || || || ||| | | | |||| || ||| | || || | | | Sbjct 59031 GTCTCAAAAAT-TTGTTGGTTAAGTTTGATAGCTTTTTCACTTTCATACGG-TATTCTCA 58974 Query 62753 G-AGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTAT 62811 | || ||| || || ||||||||||||||||||||||| ||||||||||||||| ||| Sbjct 58973 TTATAACAAAAGCATCAGCTAATCCTTGAACACCAATACCAATAGGTCTATGTCTCATAT 58914 Query 62812 TAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC 62871 | || ||| ||||| || | ||| |||||||||| || || |||||||| | |||| Sbjct 58913 TGGAATTTTTTGCTTCAGGGACAGGGTAATAATTAACTTCAATGATTTTATTCAAATTTT 58854 Query 62872 TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA---ATCAAATCGCCCATCTATTA 62928 || | ||| || || |||| ||| ||| || | || | || ||| Sbjct 58853 GTGTGATGATCTTGGTGACTTCTTTCAATTTTTCAAAGTTATAAGATTTGTCTTCGTTTA 58794 Query 62929 CAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCAT 62988 | ||||| || || |||| |||||| | ||| ||||| ||||| |||| || ||| | | Sbjct 58793 CGAACATATTTAAAGCAATAGATGCTAAATTGCACACTGCTACTTCATCAGAATCAGTGT 58734 Query 62989 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 63048 ||| || || || || || ||||| || || || ||||| |||||||||||||| || | Sbjct 58733 ATTCTACAATTTCCGTACAGAGATTGCTGCATTTAATAGTGCCTAAATTTTGTTGGTTGC 58674 Query 63049 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63108 ||||| |||| || | || || ||||| || ||||| || |||||||| | || | || Sbjct 58673 TCTTTCTGTTGCAAGAGTCTTTGTAAAGCATAAATGGTGTGCCAGTTTCCACTTGTGCTT 58614 Query 63109 CTATAATCGCTTTCCAGACGACTCGAGCCTTTA--TTATAGATTTGTATCTCCTTTCTCT 63166 | | ||| |||||||| | | | ||||| | | | | || ||||| ||||| Sbjct 58613 CAACAATAGCTTTCCACAAAATTTGAGCCCTAACTTGCTTGA--CAAATCTCTTTTCTTC 58556 Query 63167 TTCGTATAGAGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAA-TCTAGGA 63224 ||| ||| ||| || | | || || || || |||| |||| | | ||| | ||| Sbjct 58555 TTCATATTTTTCATA-AAGCTTCTCAAATTCTTC-CCCCCAACAGTCTGCAAGACCGGGA 58498 Query 63225 CATTCATCCGGACACATCA-ACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGA 63282 || |||| |||||||| | | | | |||| || | ||| |||| |||||| || | Sbjct 58497 CAGTCATGTGGACACATGAGGCTCCAATTCTCATTCTT--TTCAACTCTTTTCATGAACA 58440 Query 63283 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTAT 63342 | || || ||||| ||||| ||| || ||||| | | ||| || || || || | Sbjct 58439 GGTCTGGGATCCAGAGAGCATAAAACAGTTCTCTGGCACGTACTTCTTCCTTACCAGTGT 58380 Query 63343 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63402 ||||||| | ||| | || | | | ||||| ||||| ||||| | ||| ||||| | Sbjct 58379 TCTTTTTTAAATCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGGTAGATGGCAA 58320 Query 63403 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63462 | ||||||| ||||| || || |||||||| | ||||| || |||||||| || || | Sbjct 58319 AAGCTCCAGGACGTTTATTGCCACCCTGATCAACATATCTTGCTGTGTTATTGTACACCC 58260 Query 63463 TCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGG 63522 |||||| |||| || ||| || || | |||||| || || | || || || | | Sbjct 58259 GCAACATGGGAACAAGACCATTAGAAACACCATTTGTTCCAGCAATGTAAGTACCTTTAG 58200 Query 63523 CACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63581 | | || | | ||| || ||||| || || || ||||| || ||||| ||| Sbjct 58199 CTCTTATGCAATGGACATGA-AGTCCTATGCCTCCAGCAGACTTAGAAATCAATGCACAT 58141 Query 63582 CGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAG 63641 | || || ||||||||||| ||||| || |||||||| |||| || | ||||| Sbjct 58140 TGCTTCAATGTGTCATAGATACCTTCAATACTATCATCTTTCATAGCAATCAAGAAACAA 58081 Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 || | ||| | || | ||| | ||| ||| | |||||| ||||| || || Sbjct 58080 GAGGATAGTTGTGGTCGTGGAGTAGCAGCAGAAAAAAGTGTAGGACTGGCGTGTGTGAAG 58021 Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761 ||||||| || | || ||||| || | ||| |||| || ||||| | ||||||| Sbjct 58020 TATTTTTCTGATAATAAGTTGTATGTATTAATTGCTGCATCAATATCTTCTCCATGAATT 57961 Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 || | | || ||||| | |||||| || || | ||| Sbjct 57960 CCAATAGAAACTCGCATAAGCATGTGTTGGGGACGTTC 57923 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 63807 TTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTAT 63866 ||||||||||| ||||| || || ||| | |||||||||||||| ||||| ||||| ||| Sbjct 57835 TTGTTGTTTATCTTCAATAAATATGATCTCTCCAAAGTTTTAAATCCAAAGTAGTTATAT 57776 Query 63867 GAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTT 63916 ||| ||||| || |||| ||| | |||| ||| | || |||| ||| Sbjct 57775 TTAAAATCTCGGTCATAAACAATTGCAGAATCGAGTCTCTCTTTATTTTT 57726 >seq6 Length=1691400 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 ||||||||| ||||| | || || ||||| || || || |||||||||||||| || || Sbjct 1115783 ATACATTTCAGAATGGACATTCTCCATGGCAATTTGGAAACCGTAGAAACATCTCGCTTC 1115842 Query 33932 GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 || | |||||||| | | || || || ||| ||| ||||| || || || || Sbjct 1115843 AGTTACTTGCACTTCCTGAGAGAAGCGCTCAACTAGATTCTCATTTACAATGCCGTCTGA 1115902 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAA 34024 || ||||| || ||||||||||| || || || Sbjct 1115903 TGCAGCAAAGAAGGCCAATACATGCTTGATGAA 1115935 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/225 (69%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || | | ||| ||||| || || || | ||| ||||| || ||||| || | Sbjct 1115151 CCTCATCCCGAGAAATCAATTCATTGCTGAAAGTCAATCCAGGCATGAGACCACGTTTCT 1115210 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||||||||| || || || || || || ||||| || ||||| |||||||| | Sbjct 1115211 TCAGCCAAAATATTGACGCAAAACTGCCAGAGAAAAAGATGCCCTCTACAGCAGCAAATG 1115270 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 33778 | | || | ||| || | | || | | || |||||||| | ||||| || Sbjct 1115271 CGACAATGCGCTCGCC--GAATGTTGCAGACTTGCTGGCTATCCACTGCAGGGCCCAGTC 1115328 Query 33779 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 |||||||| || || || |||| ||||| | |||||| ||||| Sbjct 1115329 TGCCTTCTTCTTCACGCACGGCAGGGTTTCAACGGCATTGAAGAG 1115373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629581599472560