Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq28624 527 6e-145 >seq28624 Length=432676 Score = 527 bits (584), Expect = 6e-145 Identities = 1200/1782 (67%), Gaps = 36/1782 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || ||||||| || | |||| || | ||| || | || |||||||||||||||| Sbjct 59688 TCTACAGTGAATTGAATGGCGTTTGCGGCGGGTTTCGTCCGCAAATAATACATTCCAGTT 59629 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | |||| |||| ||| ||||| || |||| ||| |||| | || | | Sbjct 59628 TTCAAACCCATCTTCCAAGCGTGGAAATGAATTGATGTCAATTTACCGTAATTTGGCTCA 59569 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | | || | | ||||| |||||||| ||||| ||||||||||| || ||||| Sbjct 59568 GCAACGTGAATGTTAAACGATTGGCTTTGATCGATAAAAGCACCTCTGTCTGCAGCCAT- 59510 Query 36970 TCTAAAATACATTTTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTAT 37027 || || | | |||||| ||||||||||| || ||||| |||| | | |||| | Sbjct 59509 -CTGAATTGTAGTTTTGACTGATATCTCCCATACTGTTTTGTATAGCTCCCTGATATCTT 59451 Query 37028 CTGGTAAA---TCTAAATGTTGAATAGAACCATTAT-GTAACACAATTGTATTCTTTATG 37083 |||| | || | || |||||| || ||||||| || | | || |||||| || Sbjct 59450 TCGGTATACTTTCAATATTTTGAATGGAGCCATTATTGTGA-ATTATAAGATTCTTCATA 59392 Query 37084 TCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143 || | || ||||| | | | | |||| | || || ||||||| ||||| Sbjct 59391 TCGTCATCCCACAGCTCGGCCTGTGTCAAATCTCGAAGAAGATGGTGATTTACGACCTGG 59332 Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || || |||||||| ||||| | ||||||||| ||| | || |||| ||||||| Sbjct 59331 AATTCGCCAGATAAAACTCTGCGCTGATATATATTTGAAGTGAACGGCTCAAAGGACTCA 59272 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 || |||| | ||||| | ||||| || ||||||||||| |||| || || |||| Sbjct 59271 TTGTTACCAAGAATTTGTGCAGTAGAAGCTGTAGGCATTGGAGCTAGTAACAGCGAATTT 59212 Query 37264 CTCAATCCATGTGT----ATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGT 37319 || || || ||| | ||| || ||||| |||| |||| | ||||| || || Sbjct 59211 CTTAAACCGTGTTTTGCTATT--TTTTCTTTGAGAGTTG--TCCAGTTCCATAGGTCCGT 59156 Query 37320 TGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATA 37379 ||| | || ||||||||||||||| | |||||| ||||| || || | | | ||| Sbjct 59155 TGGCGTTTTCTCCCACATATCATATTGCAAAATACCCTTACTTGCAGGGCTACCTTCATA 59096 Query 37380 TGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATA 37439 || || || || || ||| ||||| ||| || || | ||||| ||| ||||||| Sbjct 59095 TGAACTGTATGGGCCATATTTTTCAGCTAATTCACAGCTTGCTTCTAATGCTCCATAATA 59036 Query 37440 TATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCC 37499 || || || ||||||||| || | | | | |||| ||| || || | | | Sbjct 59035 AATAGTCTCAAAAATTTGTTGGTTAAGTTTGATAGCTTTTTCACTTTCATACGGTATTCT 58976 Query 37500 CAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTT 37559 || || | ||| ||||||| || || |||||||| ||||| || ||||||||| || | Sbjct 58975 CATTATAACAAAAGCATCAGCTAATCCTTGAACACCAATACCAATAGGTCTATGTCTCAT 58916 Query 37560 ATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT 37619 ||| || | | ||| || || |||||||| | || || |||||||| | ||| Sbjct 58915 ATTGGAATTTTTTGCTTCAGGGACAGGGTAATAATTAACTTCAATGATTTTATTCAAATT 58856 Query 37620 TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAA-ATACGTTATTATT 37676 || | || || || | | | |||| || || || |||| || || | || Sbjct 58855 TTGTGTGATGATCTTGGTGACTTCTTTCAATTTTTCAAAGTTATAAGATTTGTCTTCGTT 58796 Query 37677 AACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACT 37736 || || || | || | ||||||| ||| ||| || || || |||||||| | | | Sbjct 58795 TACGAACATATTTAAAGCAATAGATGCTAAATTGCACACTGCTACTTCATCAGAATCAGT 58736 Query 37737 AAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATT 37796 ||| || ||| || ||||||||||| || || |||| || || ||||| ||| || Sbjct 58735 GTATTCTACAATTTCCGTACAGAGATTGCTGCATTTAATAGTGCCTAAATTTTGTTGGTT 58676 Query 37797 GGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC 37856 | ||| | || ||||| ||||| || || ||| | || || || ||| | ||| || Sbjct 58675 GCTCTTTCTGTTGCAAGAGTCTTTGTAAAGCATAAATGGTGTGCCAGTTTCCACTTGTGC 58616 Query 37857 CTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTT---TAAt-ttttttCT 37912 || | ||||| |||||| ||| || || |||| | |||| ||| | |||||| Sbjct 58615 TTCAACAATAGCTTTCCACAAAATTTGAGCCCTAAC--TTGCTTGACAAATCTCTTTTCT 58558 Query 37913 TTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACA-TC-GCATAATCC 37970 | ||| |||| | ||| | || | ||| || ||||||| ||| || ||| | || Sbjct 58557 T--CTTCATATTTTTCATAAAGCTTCTCAAATTC-TTCCCCCCAACAGTCTGCA-AGACC 58502 Query 37971 TGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAA 38030 ||||| || ||||||||| || ||| | |||| ||||| || | || ||| || Sbjct 58501 GGGACAGTCATGTGGACACATGAGGCTCCAATTCTCATTCTTTTCAACTCTTTTCATGAA 58442 Query 38031 TAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTAC 38090 | || || | ||| | ||| ||| | ||| ||| | |||||| || || Sbjct 58441 CAGGTCTGGGATCCAGAGAGCATAAAACAGTTCTCTGGCACGTACTTCTTCCTTACCAGT 58382 Query 38091 ATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGA 38150 |||||| |||| | ||| ||||||| |||||||||||| ||||||| || || | Sbjct 58381 GTTCTTTTTTAAATCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGGTAGATGGC 58322 Query 38151 CATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATAT 38210 | ||||| || | ||||| || ||||||| || |||||| |||||||||| || | Sbjct 58321 AAAAGCTCCAGGACGTTTATTGCCACCCTGATCAACATATCTTGCTGTGTTATTGTACAC 58262 Query 38211 TCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTT 38270 | ||||| || || | ||||||||| || ||| | || | || |||||||| || Sbjct 58261 CCGCAACATGGGAACAAGACCATTAGAAACACCATTTGTTCCAGCAATGTAAGTACCTTT 58202 Query 38271 AGCTCGTAT--ATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCG 38328 ||||| ||| | | || || | |||||| || || ||| || || || || || Sbjct 58201 AGCTCTTATGCAATGGACAT-GA-AGTCCTATGCCTCCAGCAGACTTAGAAATCAATGCA 58144 Query 38329 CATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAA 38388 ||||| || || || ||| | |||||||| ||||| ||||| || || | | | ||| Sbjct 58143 CATTGCTTCAATGTGTCATAGATACCTTCAATACTATCATCTTTCATAGCAATCAAGAAA 58084 Query 38389 CAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATG 38448 ||| || | ||| || |||||| | || ||| | ||||||| || ||| || Sbjct 58083 CAAGAGGATAGTTGTGGTCGTGGAGTAGCAGCAGAAAAAAGTGTAGGACTGGCGTGTGTG 58024 Query 38449 AACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGA 38508 || ||||||| || || | || ||||| | ||| | |||| ||||| | || ||| Sbjct 58023 AAGTATTTTTCTGATAATAAGTTGTATGTATTAATTGCTGCATCAATATCTTCTCCATGA 57964 Query 38509 ATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCT 38550 || || | ||| || | ||| ||||| ||||| || | |||| Sbjct 57963 ATTCCAATAGAAACTCGCATAAGCATGTGTTGGGGACGTTCT 57922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468349237900880