Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq28624 545 3e-150 seq6 105 9e-18 >seq28624 Length=432676 Score = 545 bits (604), Expect = 3e-150 Identities = 1196/1771 (68%), Gaps = 28/1771 (2%) Strand=Plus/Minus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 ||||||||||||| | ||||||||||| || | ||| |||||||| ||||| | | Sbjct 59682 GTGAATTGAATGGCGTTTGCGGCGGGTTTCGTCCGCAAATAATACATTCCAGTTTTCAAA 59623 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | |||| ||| ||||| || || | ||| ||| | || || || | Sbjct 59622 CCCATCTTCCAAGCGTGGAAATGAATTGATGTCAATTTACCGTAATTTGGCTCAGCAACG 59563 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 || || || | ||||| ||||||||||| || || || |||||||||||||| | || Sbjct 59562 TGAATGTTAAACGATTGGCTTTGATCGATAAAAGCACCTCTGTCTGCAGCCATCTGAATT 59503 Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 65077 | || || || || ||||| | ||||| || | ||| || | |||||| || | Sbjct 59502 GTAGTTTTGACTGATATCTCCCATACTGTTTTGTATAGCTCCCTGA-TATCTTTCGGTAT 59444 Query 65078 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATT 65134 || |||| |||||||| ||| || || || |||||| || || |||| Sbjct 59443 ACTTTCAATATTTTGAATGGAGCCATTATTGTGAATTATAAGATTCTTCATATCGTCATC 59384 Query 65135 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 65194 ||| | | || || ||| ||| ||| ||||| |||| || || || ||||| || Sbjct 59383 CCACAGCTCGGCCTGTGTCAAATCTCGAAGAAGATGGTGATTTACGACCTGGAATTCGCC 59324 Query 65195 AGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCC 65254 ||| || ||||| || || ||||| || |||| || | |||||||| || || Sbjct 59323 AGATAAAACTCTGCGCTGATATATATTTGAAGTGAACGGCTCAAAGGACTCATTGTTACC 59264 Query 65255 CAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314 | |||||| ||||| || || || ||||| || || | || | |||||| | ||| Sbjct 59263 AAGAATTTGTGCAGTAGAAGCTGTAGGCATTGGAGCTAGTAACAGCGAATTTCTTAAACC 59204 Query 65315 GTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNN 65374 || | || ||||| ||||| |||| | ||| ||||| || |||| || Sbjct 59203 GTGTTTTGCTATTTTTTCTTTGAGAGTTGTCCAGTTCCATAGGTCCGTTGGCGTTTTCTC 59144 Query 65375 NNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATG 65433 ||| | |||||| ||||| || | | | ||| |||||| | ||||| Sbjct 59143 CCACATATCATATTGCAAAATACCCTTACTTGCAGGGCTA-CCTTCATATGAACTGTATG 59085 Query 65434 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGA 65493 | || | || ||||||| |||||| || || |||||||| || |||||||| || || | Sbjct 59084 GGCCATATTTTTCAGCTAATTCACAGCTTGCTTCTAATGCTCCATAATAAATAGTCTCAA 59025 Query 65494 AGATCTTCTTATTTAGATCTTGT-GCTTCCAGGCTATCAAATGGATAATTTAAG-AGAAT 65551 | || || || ||| | | | |||| || ||| | || || | | | | || Sbjct 59024 AAAT-TTGTTGGTTAAGTTTGATAGCTTTTTCACTTTCATACGG-TATTCTCATTATAAC 58967 Query 65552 AAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGAT 65611 ||| || || ||||||||||||||||||||||| ||||||||||||||| |||| || | Sbjct 58966 AAAAGCATCAGCTAATCCTTGAACACCAATACCAATAGGTCTATGTCTCATATTGGAATT 58907 Query 65612 TTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAAT 65671 || ||||| || | ||| |||||||||| || || |||||||| | |||| || Sbjct 58906 TTTTGCTTCAGGGACAGGGTAATAATTAACTTCAATGATTTTATTCAAATTTTGTGTGAT 58847 Query 65672 TACTTTGACCACATCCTTCAGTTTGAGAAA---ATCAAATCGCTCATCTATTACAAACAT 65728 | ||| || || |||| ||| ||| || | || || || |||| ||||| Sbjct 58846 GATCTTGGTGACTTCTTTCAATTTTTCAAAGTTATAAGATTTGTCTTCGTTTACGAACAT 58787 Query 65729 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 65788 || || |||| |||||| | ||| || || ||||| |||| || ||| | |||| || Sbjct 58786 ATTTAAAGCAATAGATGCTAAATTGCACACTGCTACTTCATCAGAATCAGTGTATTCTAC 58727 Query 65789 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 65848 || || || || ||||| || || || || || |||||||||||||| || |||||| | Sbjct 58726 AATTTCCGTACAGAGATTGCTGCATTTAATAGTGCCTAAATTTTGTTGGTTGCTCTTTCT 58667 Query 65849 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908 ||| || | || || ||||| || ||||| || |||||||| | || | ||| | ||| Sbjct 58666 GTTGCAAGAGTCTTTGTAAAGCATAAATGGTGTGCCAGTTTCCACTTGTGCTTCAACAAT 58607 Query 65909 CGCTTTCCAGACGACTCGAGCCTTTA--TTATAGATTTGTATCTCTTTTCTCTTTCGTAT 65966 |||||||| | | | ||||| | | | | || ||||||||||| ||| ||| Sbjct 58606 AGCTTTCCACAAAATTTGAGCCCTAACTTGCTTGA--CAAATCTCTTTTCTTCTTCATAT 58549 Query 65967 AGTGTATACAATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAA-TCCAGGACATTCAT 66024 | ||| || | | || || || || |||| |||| | | ||| || ||||| |||| Sbjct 58548 TTTTCATA-AAGCTTCTCAAATTCTTC-CCCCCAACAGTCTGCAAGACCGGGACAGTCAT 58491 Query 66025 CCGGACACATCA-ACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGG 66082 |||||||| | | | | |||| || | ||| |||| |||||| || || || || Sbjct 58490 GTGGACACATGAGGCTCCAATTCTCATTCTT--TTCAACTCTTTTCATGAACAGGTCTGG 58433 Query 66083 AATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142 ||||| ||||| ||| | ||||||| | ||| || || || || |||||||| Sbjct 58432 GATCCAGAGAGCATAAAACAGTTCTCTGGCACGTACTTCTTCCTTACCAGTGTTCTTTTT 58373 Query 66143 AAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCC 66202 | ||| | || | | | |||| ||||| ||||| | ||| ||||| | | |||| Sbjct 58372 TAAATCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGGTAGATGGCAAAAGCTCC 58313 Query 66203 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 66262 ||| ||||| || || |||||||| | ||||| || |||||||| || || | |||||| Sbjct 58312 AGGACGTTTATTGCCACCCTGATCAACATATCTTGCTGTGTTATTGTACACCCGCAACAT 58253 Query 66263 TGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT 66322 |||| || |||||| || |||||| || || | || || | || | || | || Sbjct 58252 GGGAACAAGACCATTAGAAACACCATTTGTTCCAGCAATGTAAGTACCTTTAGCTCTTAT 58193 Query 66323 ATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 66381 | | ||| || ||||| || || || ||||| || ||||| ||| | || | Sbjct 58192 GCAATGGACATGA-AGTCCTATGCCTCCAGCAGACTTAGAAATCAATGCACATTGCTTCA 58134 Query 66382 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 66441 | || |||||||| || || ||||||||||| |||| || | ||||| || | Sbjct 58133 ATGTGTCATAGATACCTTCAATACTATCATCTTTCATAGCAATCAAGAAACAAGAGGATA 58074 Query 66442 TTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 66501 ||| | || ||| | ||| ||| | |||||| ||||| || || |||||| Sbjct 58073 GTTGTGGTCGTGGAGTAGCAGCAGAAAAAAGTGTAGGACTGGCGTGTGTGAAGTATTTTT 58014 Query 66502 CAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTG 66561 | || | || ||||| || | ||| |||| || ||||| | ||||||||| | | Sbjct 58013 CTGATAATAAGTTGTATGTATTAATTGCTGCATCAATATCTTCTCCATGAATTCCAATAG 57954 Query 66562 CGACACGCATTAACATGTGCTGAGGTCTTTC 66592 || ||||| | |||||| || || | ||| Sbjct 57953 AAACTCGCATAAGCATGTGTTGGGGACGTTC 57923 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 66599 CTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 |||||||||||| ||||| || || ||| | |||||||||||||| ||||| ||||| || Sbjct 57836 CTTGTTGTTTATCTTCAATAAATATGATCTCTCCAAAGTTTTAAATCCAAAGTAGTTATA 57777 Query 66659 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 66709 | ||| ||||| || |||| ||| | || | |||| | || |||| ||| Sbjct 57776 TTTAAAATCTCGGTCATAAACAATTGCAGAATCGAGTCTCTCTTTATTTTT 57726 >seq6 Length=1691400 Score = 105 bits (116), Expect = 9e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||| | | |||||| ||||| | || ||||||||| ||||| | || || ||||| Sbjct 1115753 ATCTCTGATATATGTGTCAATGAGCAGGGAATACATTTCAGAATGGACATTCTCCATGGC 1115812 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 36537 ||||| || |||||||||||||| || || || | || ||||| | | || || || Sbjct 1115813 AATTTGGAAACCGTAGAAACATCTCGCTTCAGTTACTTGCACTTCCTGAGAGAAGCGCTC 1115872 Query 36538 TGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 36597 ||| ||| ||||| || || ||||| || ||||| || ||||||||||| || || Sbjct 1115873 AACTAGATTCTCATTTACAATGCCGTCTGATGCAGCAAAGAAGGCCAATACATGCTTGAT 1115932 Query 36598 AAA 36600 || Sbjct 1115933 GAA 1115935 Score = 89.7 bits (98), Expect = 7e-13 Identities = 155/223 (70%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| || | | ||| ||||| ||| || || | ||| ||||| || ||||| || | Sbjct 1115151 CCTCATCCCGAGAAATCAATTCATTGCTGAAAGTCAATCCAGGCATGAGACCACGTTTCT 1115210 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| |||||||| ||||| || || || || ||||| || ||||| | Sbjct 1115211 TCAGCCAAAATATTGACGCAAAACTGCCAGAGAAAAAGATGCCCTCTACAGCAGCAAATG 1115270 Query 36300 CAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG-TATCCACTTTTGAGCCCAATCGG 36356 | | || | ||| || | || ||| | | |||||||| | ||||| || | Sbjct 1115271 CGACAATGCGCTCGCCGAATGTTGCAGACTTGCTGGCTATCCACTGCAGGGCCCAGTCTG 1115330 Query 36357 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 ||||||| || || || |||| || || | ||||| ||||| Sbjct 1115331 CCTTCTTCTTCACGCACGGCAGGGTTTCAACGGCATTGAAGAG 1115373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657926174424680