Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq28624 547 1e-150 seq6 105 1e-17 >seq28624 Length=432676 Score = 547 bits (606), Expect = 1e-150 Identities = 1195/1770 (68%), Gaps = 26/1770 (1%) Strand=Plus/Minus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 ||||||||||||| | ||||||||||| || | ||| |||||||| ||||| | | Sbjct 59682 GTGAATTGAATGGCGTTTGCGGCGGGTTTCGTCCGCAAATAATACATTCCAGTTTTCAAA 59623 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | |||| ||| |||||| || || | ||| ||| | || || || | Sbjct 59622 CCCATCTTCCAAGCGTGGAAATGAATTGATGTCAATTTACCGTAATTTGGCTCAGCAACG 59563 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 || || || | ||||| ||||||||||| || || || |||||||||||||| | || Sbjct 59562 TGAATGTTAAACGATTGGCTTTGATCGATAAAAGCACCTCTGTCTGCAGCCATCTGAATT 59503 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAG 78956 | || || || || ||||| | ||||| || | ||| || | |||||| || | Sbjct 59502 GTAGTTTTGACTGATATCTCCCATACTGTTTTGTATAGCTCCCTGA-TATCTTTCGGTAT 59444 Query 78957 GTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATT 79013 || |||| |||||||| ||| || || || |||||| || || |||| Sbjct 59443 ACTTTCAATATTTTGAATGGAGCCATTATTGTGAATTATAAGATTCTTCATATCGTCATC 59384 Query 79014 CCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCC 79073 ||| | | || || ||| ||| ||| ||||| |||| || || || ||||| || Sbjct 59383 CCACAGCTCGGCCTGTGTCAAATCTCGAAGAAGATGGTGATTTACGACCTGGAATTCGCC 59324 Query 79074 AGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCC 79133 ||| || ||||| || || ||||| || | || || | || ||||| || || Sbjct 59323 AGATAAAACTCTGCGCTGATATATATTTGAAGTGAACGGCTCAAAGGACTCATTGTTACC 59264 Query 79134 CAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 79193 | |||||| ||||| || || || ||||| || || | || | |||||| | ||| Sbjct 59263 AAGAATTTGTGCAGTAGAAGCTGTAGGCATTGGAGCTAGTAACAGCGAATTTCTTAAACC 59204 Query 79194 GTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATT 79253 || | | ||||| ||||| |||| | ||| | ||| || || | || | Sbjct 59203 GTGTTTTGCTATTTTTTCTTTGAGAGTTGTCCAGTTCCATAGGTCCGTTGGCGTTTTCTC 59144 Query 79254 CCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGG 79313 ||| | ||||||||| | |||||| ||||| || ||| |||| || || Sbjct 59143 CCACATATCATATTGCAAAATACCCTTACTTGCAGGGCTACCTTCATATGAACTGTATGG 59084 Query 79314 TCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAA 79373 || | ||||| ||||||||||| || || ||||||||||| |||||||| || || || Sbjct 59083 GCCATATTTTTCAGCTAATTCACAGCTTGCTTCTAATGCTCCATAATAAATAGTCTCAAA 59024 Query 79374 AATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAG-AGAATAA 79432 ||| | | || || | |||| | || ||| | || || | | | | || || Sbjct 59023 AATTTGTTGGTTAAGTTTGATAGCTTTTTCACTTTCATACGG-TATTCTCATTATAACAA 58965 Query 79433 ACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTT 79492 | || || ||||||||||||||||||||||| ||||||||||||||| |||| ||| ||| Sbjct 58964 AAGCATCAGCTAATCCTTGAACACCAATACCAATAGGTCTATGTCTCATATTGGAATTTT 58905 Query 79493 CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACT-ATT 79551 ||||| || | ||| |||||||||| || || |||||||| | ||| || | || Sbjct 58904 TTGCTTCAGGGACAGGGTAATAATTAACTTCAATGATTTTATTCAAATTT-TGTGTGATG 58846 Query 79552 ACTTTGACCACATCCTTTAGTTTGAGAAA---ATCAAATCGTCCATCTATTACAAACATG 79608 | ||| || || || | ||| ||| || | || | || |||| ||||| Sbjct 58845 ATCTTGGTGACTTCTTTCAATTTTTCAAAGTTATAAGATTTGTCTTCGTTTACGAACATA 58786 Query 79609 TTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATT 79668 || || || | |||||| | ||| || || ||||| |||| || ||| | |||| || Sbjct 58785 TTTAAAGCAATAGATGCTAAATTGCACACTGCTACTTCATCAGAATCAGTGTATTCTACA 58726 Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 ||||| || ||||| || || || ||||| || |||||||||||||| || |||||| || Sbjct 58725 ATTTCCGTACAGAGATTGCTGCATTTAATAGTGCCTAAATTTTGTTGGTTGCTCTTTCTG 58666 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 || || | || || ||||| || || || || |||||||| | || | ||| | ||| Sbjct 58665 TTGCAAGAGTCTTTGTAAAGCATAAATGGTGTGCCAGTTTCCACTTGTGCTTCAACAATA 58606 Query 79789 GCTTTCCAGACGACTCGAGCCTTTA--TTATAGACTTGTATCTCTTTTCTCTTTCGTATT 79846 |||||||| | | | ||||| | | | | ||| ||||||||||| ||| |||| Sbjct 58605 GCTTTCCACAAAATTTGAGCCCTAACTTGCTTGAC--AAATCTCTTTTCTTCTTCATATT 58548 Query 79847 GTGTATATAATCGT-TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCA 79905 | ||| || | | || || || || |||||| || | | || ||||| || | Sbjct 58547 TTTCATA-AAGCTTCTCAAATTCTTCCCCCCAACAGTCTGCAAGACCGGGACAGTCATGT 58489 Query 79906 GGACACATCAACGACCACTCTCCATCATCCTTT---ACTCGTTTCATAAAGAGATCAGGA 79962 |||||||| | ||| | || |||| |||| |||| |||||| || || || || Sbjct 58488 GGACACATGAGGCTCCAAT-TC--TCATTCTTTTCAACTCTTTTCATGAACAGGTCTGGG 58432 Query 79963 ATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTA 80022 ||||| ||||| ||| || ||||||| | || || || || || |||||||| Sbjct 58431 ATCCAGAGAGCATAAAACAGTTCTCTGGCACGTACTTCTTCCTTACCAGTGTTCTTTTTT 58372 Query 80023 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCC 80082 | ||| | || | | | ||||| ||||| ||||| | ||| ||||| | | |||| Sbjct 58371 AAATCCAAAAATTCGAATACATCAGCGTGCCAGGGTTCTAGGTAGATGGCAAAAGCTCCA 58312 Query 80083 GGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 80142 || ||||| || || |||||||| | ||||| || |||||||| || || | |||||| Sbjct 58311 GGACGTTTATTGCCACCCTGATCAACATATCTTGCTGTGTTATTGTACACCCGCAACATG 58252 Query 80143 GGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATA 80202 |||| || |||||| || |||||| || || | || || | || | || | || Sbjct 58251 GGAACAAGACCATTAGAAACACCATTTGTTCCAGCAATGTAAGTACCTTTAGCTCTTATG 58192 Query 80203 TTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 80261 | | ||| || ||||| || || || ||||| || ||||| ||| | || || Sbjct 58191 CAATGGACATGA-AGTCCTATGCCTCCAGCAGACTTAGAAATCAATGCACATTGCTTCAA 58133 Query 80262 CGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACAT 80321 || |||||||| || || || |||||||| |||| || | ||||| || | Sbjct 58132 TGTGTCATAGATACCTTCAATACTATCATCTTTCATAGCAATCAAGAAACAAGAGGATAG 58073 Query 80322 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 80381 ||| | || ||| | ||| ||| | |||||| ||||| || || ||||||| Sbjct 58072 TTGTGGTCGTGGAGTAGCAGCAGAAAAAAGTGTAGGACTGGCGTGTGTGAAGTATTTTTC 58013 Query 80382 AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGC 80441 || | || ||||| || | ||| |||| || ||||| | ||||||||| | | Sbjct 58012 TGATAATAAGTTGTATGTATTAATTGCTGCATCAATATCTTCTCCATGAATTCCAATAGA 57953 Query 80442 GACACGCATTAACATGTGCTGAGGTCTTTC 80471 || ||||| | |||||| || || | ||| Sbjct 57952 AACTCGCATAAGCATGTGTTGGGGACGTTC 57923 Score = 87.8 bits (96), Expect = 3e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 80478 CTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537 |||||| ||||| ||||| || || ||| | |||||||||||||| ||||| ||||| || Sbjct 57836 CTTGTTGTTTATCTTCAATAAATATGATCTCTCCAAAGTTTTAAATCCAAAGTAGTTATA 57777 Query 80538 TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTT 80588 | ||| ||||| || |||| ||| | || | |||| | || |||| ||| Sbjct 57776 TTTAAAATCTCGGTCATAAACAATTGCAGAATCGAGTCTCTCTTTATTTTT 57726 >seq6 Length=1691400 Score = 105 bits (116), Expect = 1e-17 Identities = 159/225 (71%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || | | ||| | ||| ||| || || | ||| ||||| || ||||| || | Sbjct 1115151 CCTCATCCCGAGAAATCAATTCATTGCTGAAAGTCAATCCAGGCATGAGACCACGTTTCT 1115210 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||||||||| |||||||| ||||| || ||||| || ||||| || ||||| | Sbjct 1115211 TCAGCCAAAATATTGACGCAAAACTGCCAGAGAAAAAGATGCCCTCTACAGCAGCAAATG 1115270 Query 50102 CAACAAGTCTCTCTCCATAACTGGCGCTGTCATG-----TATCCACTTTTGAGCCCAATC 50156 | |||| | ||| || | || || | | || |||||||| | ||||| || Sbjct 1115271 CGACAATGCGCTCGCC--GAATGTTGCAGACTTGCTGGCTATCCACTGCAGGGCCCAGTC 1115328 Query 50157 GGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 50201 |||||||| || || || |||| ||||| | |||||| ||||| Sbjct 1115329 TGCCTTCTTCTTCACGCACGGCAGGGTTTCAACGGCATTGAAGAG 1115373 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||||||||| ||||| | || || ||||| || || || |||||||||||||| || || Sbjct 1115783 ATACATTTCAGAATGGACATTCTCCATGGCAATTTGGAAACCGTAGAAACATCTCGCTTC 1115842 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 || | |||||||| | | || || ||| ||| ||| ||||| || || ||||| Sbjct 1115843 AGTTACTTGCACTTCCTGAGAGAAGCGCTCAACTAGATTCTCATTTACAATGCCGTCTGA 1115902 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATG 50405 || ||||| || ||||||||||| || || || || Sbjct 1115903 TGCAGCAAAGAAGGCCAATACATGCTTGATGAAGTG 1115938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717999655702280