Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq397 116 3e-21 seq27819 98.7 8e-16 seq504 93.3 3e-14 seq87 87.8 1e-12 >seq397 Length=962699 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | ||||||||| || | |||||| |||| || ||||| ||||| || ||| Sbjct 58475 TCTTTTTGAATATTGTAATCCGAAAGAGTACGTCCGTCTTCTAATTGCTTGCCCGCGAAA 58534 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||||||||| ||||| | || | ||||| || || || |||| || | Sbjct 58535 ATCAATCGCTGCTGATCAGGTGGTATGCCTTCCTTGTCTTGAATTTTTGCTTTTACATTT 58594 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 ||| ||| ||| | ||| || || | || |||||||| || |||| |||||||||| Sbjct 58595 TCAATTGTATCGGATGGCTCAACTTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACA 58654 Query 43099 AAAATTTGCATT 43110 |||||||||||| Sbjct 58655 AAAATTTGCATT 58666 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || || || | || ||||| |||| |||| ||||||||| | ||||| ||||| Sbjct 56386 GCCACCGCGAAGACGCAAAACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 56445 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || || | || |||| |||||| || ||||||||||||| ||| || || | || Sbjct 56446 CAGAGTGCGACCATCTTCCAGTTGTTTACCCGCAAAAATCAATCTCTGCTGGTCTGGAGG 56505 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||| || || |||| | || || | | | |||||| || || || Sbjct 56506 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCAC 56565 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||||| ||||| ||||| || ||||| ||||| || ||||| Sbjct 56566 CTCCAAGGTTATGGTTTTACCGGTCAGGGTTTTAACAAATATCTGCAT 56613 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | ||||||| ||| | ||| ||| || || | || || ||||| Sbjct 57070 GCCACCACGGAGACGCAACACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGA 57129 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || || | || ||||||||||| || || || || | ||||| ||||| | || Sbjct 57130 CAAAGTGCGACCATCTTCCAATTGTTTACCCGCGAAGATAAGACGCTGCTGATCTGGGGG 57189 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | || || | | | |||||| || || || Sbjct 57190 AATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGTTCCAC 57249 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||||| ||||| || || || ||||| ||||| || ||||| Sbjct 57250 CTCTAAGGTTATGGTTTTACCAGTCAGGGTTTTAACAAAGATCTGCAT 57297 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| ||||| || | || |||| ||| | ||| ||| || || | || || ||||| Sbjct 57298 GCCACCACGGAGACGCAATACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGA 57357 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 |||||| || | || || | |||||| || || || || | |||||| ||||| | || Sbjct 57358 CAATGTGCGCCCATCTTCTAGTTGTTTACCAGCGAAGATAAGTCGCTGCTGATCTGGGGG 57417 Query 43002 CACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | |||||||| || ||| ||| | || || | ||| ||||| || || | Sbjct 57418 AATGCCTTCTTTGTC-CTGAATCTTGGCCTTCACATTTTCAATGGTGTCAGAAGGTTCCA 57476 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || ||||| ||||| || ||||| ||||| || ||||| Sbjct 57477 CTTCCAAGGTGATGGTTTTACCGGTCAGGGTTTTAACAAAGATCTGCAT 57525 >seq27819 Length=1354 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| |||| ||| || || ||||| | |||| ||||| || | ||||| ||||| Sbjct 857 CCTCCTCGCAATCTCAATACTAAATGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGAA 798 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || || ||||| |||||||||||||| | ||||||||| || | || Sbjct 797 AGAGTGCGTCCATCTTCTAATTGCTTGCCGGCAAAAATAAGTCGCTGTTGGTCAGGAGGA 738 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || ||| | || || | ||| |||||| | ||| || Sbjct 737 ATCCCCTCTTTGTCTTGGATTTTAGCCTTTACATTCTCAATTGTGTCTGATGGCTCAACT 678 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || || || || || || || |||||||| || ||||| Sbjct 677 TCTAATGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 631 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| |||| |||||| || ||||| | |||| ||||| || | ||||| || ||| Sbjct 1313 CCTCCTCGCAATCTTAATACTAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCCGAC 1254 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || |||||||| ||||||||||| || | || ||||| || | || Sbjct 1253 AGTGTACGGCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGA 1194 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || ||| || ||||||| | | | ||||| | || || Sbjct 1193 ATCCCCTCTTTGTC-CTGAATTTTGGCTTTGACATTCTCGATAGTGTCAGATGGTTCAAC 1135 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| || ||||| ||||| || ||||| Sbjct 1134 TTCCAAAGTGATGGTCTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 1087 >seq504 Length=80497 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| ||||| ||||| | |||| || || || | ||||| || ||| Sbjct 72887 CCTCCTCTCAATCTCAACACTAAATGCAGAGTGGATTCTTTCTGAATGTTGTAGTCTGAC 72828 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| | || |||||||| ||||||||||| || | || ||||| || | || Sbjct 72827 AGTGTACGGCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGA 72768 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || ||| || |||| || | ||| ||| || | ||| || Sbjct 72767 ATCCCCTCTTTGTC-CTGAATTTTAGCTTTCACATTTTCAATTGTATCCGATGGCTCAAC 72709 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || ||||| || || || || || |||||||| || ||||| Sbjct 72708 TTCTAATGTAATAGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 72661 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || ||| || || ||||| | |||| || || || | ||||| || ||| Sbjct 74122 CCTCCTCTCAATCTCAATACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGAC 74063 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| |||||||| ||||||||||| || | || ||||| || | || Sbjct 74062 AGTGTACGGCCGTCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGA 74003 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || || | || || | ||| ||||| | ||| || Sbjct 74002 ATCCCCTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATAGTGTCAGATGGCTCAACC 73943 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| || || |||||||| || ||||| Sbjct 73942 TCCAATGTGATGGTCTTTCCGGTGAGTGTCTTCACAAAGATCTGCAT 73896 >seq87 Length=431742 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || |||||| |||| ||| |||||| || | ||||| || || Sbjct 313635 CCACCACGAAGACGTAGCACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGAA 313576 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || |||| || |||||||| || |||| ||||| || |||| || Sbjct 313575 AGAGTGCGACCATCTTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGA 313516 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || ||||| || |||| | || || | | | ||||| ||||| || Sbjct 313515 ATGCCCTCTTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCAGAGGCCTCCACC 313456 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTTAATTT 43120 || | || || || ||||| ||||| || ||||| || ||||||||||| | |||| Sbjct 313455 TCGAGGGTGATTGTCTTTCCCGTTAGGGTCTTCACGAAGATTTGCATTTTGGTGATTT 313398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381230268642666