Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq28624 536 2e-147 seq6 107 3e-18 >seq28624 Length=432676 Score = 536 bits (594), Expect = 2e-147 Identities = 1178/1751 (67%), Gaps = 30/1751 (2%) Strand=Plus/Minus Query 70822 GCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAA 70881 |||| |||||| || | ||| ||||| || ||||| | ||| | |||| ||| ||| Sbjct 59661 GCGGGTTTCGTCCGCAAATAATACATTCCAGTTTTCAAACCCATCTTCCAAGCGTGGAAA 59602 Query 70882 TGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTT 70941 || || || | ||| || | || || || | |||||| || | ||| || ||| Sbjct 59601 TGAATTGATGTCAATTTACCGTAATTTGGCTCAGCAACGTGAATGTTAAACGATTGGCTT 59542 Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 |||||||| || || || |||||||||||||| | || | || || || || ||| Sbjct 59541 TGATCGATAAAAGCACCTCTGTCTGCAGCCATCTGAATTGTAGTTTTGACTGATATCTCC 59482 Query 71002 CAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAGGTTTG---TATTCTGAATGGA 71057 || | ||||| || | ||| || | |||||| || | || |||| |||||||| Sbjct 59481 CATACTGTTTTGTATAGCTCCCTGA-TATCTTTCGGTATACTTTCAATATTTTGAATGGA 59423 Query 71058 TCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAA 71117 ||| || ||| || ||| || || || |||| ||| | | || || || Sbjct 59422 GCCATTATTGTGAATTATAAGATTCTTCATATCGTCATCCCACAGCTCGGCCTGTGTCAA 59363 Query 71118 AACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTA 71177 | ||| ||| ||||| |||| || || || ||||| ||||| || ||||| || || Sbjct 59362 ATCTCGAAGAAGATGGTGATTTACGACCTGGAATTCGCCAGATAAAACTCTGCGCTGATA 59303 Query 71178 AATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGC 71237 ||||| || |||| || | |||||||| || || | |||||| ||||| || || Sbjct 59302 TATATTTGAAGTGAACGGCTCAAAGGACTCATTGTTACCAAGAATTTGTGCAGTAGAAGC 59243 Query 71238 AGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTT 71297 || ||||| || || | || || |||||| | ||| ||| | ||||| ||||| Sbjct 59242 TGTAGGCATTGGAGCTAGTAACAGCGAATTTCTTAAACCGTGTTTTGCTATTTTTTCTTT 59183 Query 71298 TAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNAT 71357 |||| | ||| ||||| || |||| ||| || Sbjct 59182 GAGAGTTGTCCAGTTCCATAGGTCCGTTGGCGTTTTCTCCCACATATCATATTGCAAAAT 59123 Query 71358 GCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTC 71417 || ||||| || ||| |||||| | |||||| || | |||||| |||| ||| Sbjct 59122 ACCCTTACTTGCAGGGCTACCTTCATATGAACTGTATGGGCCATATTTTTCAGCTAATTC 59063 Query 71418 ACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTG 71477 ||| || || |||||||||||||||||||| || || ||||| | | || || | Sbjct 59062 ACAGCTTGCTTCTAATGCTCCATAATAAATAGTCTCAAAAATTTGTTGGTTAAGTTTGAT 59003 Query 71478 TGCTTCCGGGCTATCAAATGGATAATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAA 71536 |||| || ||| | || || | | | | || ||| || || ||||||||||||| Sbjct 59002 AGCTTTTTCACTTTCATACGG-TATTCTCATTATAACAAAAGCATCAGCTAATCCTTGAA 58944 Query 71537 CGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAAT 71596 | |||||||| |||||||| |||||| |||| ||| ||| ||||| || | ||| |||| Sbjct 58943 CACCAATACCAATAGGTCTATGTCTCATATTGGAATTTTTTGCTTCAGGGACAGGGTAAT 58884 Query 71597 AATTAATATCTATAATTTTATTGAGATTTCTGACT-ATTACTTTGACCACATCCTTTAGT 71655 |||||| || || |||||||| | |||| || | || | ||| || || || | | Sbjct 58883 AATTAACTTCAATGATTTTATTCAAATTT-TGTGTGATGATCTTGGTGACTTCTTTCAAT 58825 Query 71656 TTGAGAAA---ATCAAATCTCCCATCTATTACAAACACGTTCAAGGCAACAGATGCCAGA 71712 || ||| || | || | | || |||| |||| || || |||| |||||| | | Sbjct 58824 TTTTCAAAGTTATAAGATTTGTCTTCGTTTACGAACATATTTAAAGCAATAGATGCTAAA 58765 Query 71713 TTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTA 71772 || || || ||||| |||| || ||| | |||| || |||||| || || ||||| || Sbjct 58764 TTGCACACTGCTACTTCATCAGAATCAGTGTATTCTACAATTTCCGTACAGAGATTGCTG 58705 Query 71773 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 71832 || || || || |||||||||||||| || |||||| |||| || | || || ||||| Sbjct 58704 CATTTAATAGTGCCTAAATTTTGTTGGTTGCTCTTTCTGTTGCAAGAGTCTTTGTAAAGC 58645 Query 71833 ATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 71892 ||||| || || |||||||| | || | ||| | ||| |||||||| | | | ||||| Sbjct 58644 ATAAATGGTGTGCCAGTTTCCACTTGTGCTTCAACAATAGCTTTCCACAAAATTTGAGCC 58585 Query 71893 TTTATTATATTCTTG---TATCTCTTTTCTCTTTCGTATTGTGTATATAATCGT-TCGAA 71948 | | | | |||| ||||||||||| ||| |||| | ||| || | | || || Sbjct 58584 CTAACT---TGCTTGACAAATCTCTTTTCTTCTTCATATTTTTCATA-AAGCTTCTCAAA 58529 Query 71949 CTCGTCTCCCCAAGCATTGT-CTAATCCAGGACATTCATTCGGACACATCAATGACCACT 72007 || || |||||| || | | | | || ||||| |||| |||||||| | ||| | Sbjct 58528 TTCTTCCCCCCAA-CAGTCTGCAAGACCGGGACAGTCATGTGGACACATGAGGCTCCAAT 58470 Query 72008 CTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 72065 ||| || ||| |||| |||||| || || || || ||||| ||||| ||| || Sbjct 58469 TCTCAT--TCTTTTCAACTCTTTTCATGAACAGGTCTGGGATCCAGAGAGCATAAAACAG 58412 Query 72066 ATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 72125 ||||||| | || || || || || |||||||| | ||| | || | | | Sbjct 58411 TTCTCTGGCACGTACTTCTTCCTTACCAGTGTTCTTTTTTAAATCCAAAAATTCGAATAC 58352 Query 72126 ATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTG 72185 ||||| ||||| ||||| | ||| ||||| | | |||| || ||||| || || ||||| Sbjct 58351 ATCAGCGTGCCAGGGTTCTAGGTAGATGGCAAAAGCTCCAGGACGTTTATTGCCACCCTG 58292 Query 72186 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGC 72245 ||| | ||||| || |||||||| || || | |||||| |||| || |||||| || | Sbjct 58291 ATCAACATATCTTGCTGTGTTATTGTACACCCGCAACATGGGAACAAGACCATTAGAAAC 58232 Query 72246 ACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCT 72303 |||||| || || | || || | || | || | || | || | ||| || ||| Sbjct 58231 ACCATTTGTTCCAGCAATGTAAGTACCTTTAGCTCTTATGCAATG-GACATGA-AGTCCT 58174 Query 72304 ATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCT 72363 || || || || ||||| || ||||| ||| | || || || |||||||| || || Sbjct 58173 ATGCCTCCAGCAGACTTAGAAATCAATGCACATTGCTTCAATGTGTCATAGATACCTTCA 58114 Query 72364 ATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCC 72423 ||||||||||| |||| || | ||||| || | ||| | || ||| | Sbjct 58113 ATACTATCATCTTTCATAGCAATCAAGAAACAAGAGGATAGTTGTGGTCGTGGAGTAGCA 58054 Query 72424 GCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTC 72483 ||| ||| | |||||| ||||| || || ||||||| || | || ||||| || Sbjct 58053 GCAGAAAAAAGTGTAGGACTGGCGTGTGTGAAGTATTTTTCTGATAATAAGTTGTATGTA 57994 Query 72484 TCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGC 72543 | ||| |||| || ||||| | ||| ||||| | | || ||||| | ||| || Sbjct 57993 TTAATTGCTGCATCAATATCTTCTCCATGAATTCCAATAGAAACTCGCATAAGCATGTGT 57934 Query 72544 TGAGGTCTTTC 72554 || || | ||| Sbjct 57933 TGGGGACGTTC 57923 Score = 93.3 bits (102), Expect = 6e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 72561 CTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 |||||| ||||| ||||| || || ||| | |||||||||||||| ||||| ||||| || Sbjct 57836 CTTGTTGTTTATCTTCAATAAATATGATCTCTCCAAAGTTTTAAATCCAAAGTAGTTATA 57777 Query 72621 TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTT 72671 | ||| ||||| || |||| ||| | |||| |||| | || |||| ||| Sbjct 57776 TTTAAAATCTCGGTCATAAACAATTGCAGAATCGAGTCTCTCTTTATTTTT 57726 >seq6 Length=1691400 Score = 107 bits (118), Expect = 3e-18 Identities = 159/223 (71%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| | | ||| ||||| ||| || || | ||| ||||| || ||||| || | Sbjct 1115151 CCTCATCCCGAGAAATCAATTCATTGCTGAAAGTCAATCCAGGCATGAGACCACGTTTCT 1115210 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||||||||| |||||||| ||||| || ||||| || ||||| || ||||| | Sbjct 1115211 TCAGCCAAAATATTGACGCAAAACTGCCAGAGAAAAAGATGCCCTCTACAGCAGCAAATG 1115270 Query 42207 CAATAAGTCTCTCTCCATAACCGGC--ACTGTCATG-TATCCACTTTTGAGCCCAATCGG 42263 | | || | ||| || | || ||| | | |||||||| | ||||| || | Sbjct 1115271 CGACAATGCGCTCGCCGAATGTTGCAGACTTGCTGGCTATCCACTGCAGGGCCCAGTCTG 1115330 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 ||||||| || || || |||| ||||| | |||||| ||||| Sbjct 1115331 CCTTCTTCTTCACGCACGGCAGGGTTTCAACGGCATTGAAGAG 1115373 Score = 100 bits (110), Expect = 4e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||| | | |||||| || || | || ||||||||| ||||| | || || ||||| Sbjct 1115753 ATCTCTGATATATGTGTCAATGAGCAGGGAATACATTTCAGAATGGACATTCTCCATGGC 1115812 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || || || |||||||||||||| || || || || || ||||| | | || || || Sbjct 1115813 AATTTGGAAACCGTAGAAACATCTCGCTTCAGTTACTTGCACTTCCTGAGAGAAGCGCTC 1115872 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | ||| ||| || || || || ||||| || ||||| || ||||||||||| || || Sbjct 1115873 AACTAGATTCTCATTTACAATGCCGTCTGATGCAGCAAAGAAGGCCAATACATGCTTGAT 1115932 Query 42505 AAA 42507 || Sbjct 1115933 GAA 1115935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670887715752520