Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq826 156 6e-33 seq28624 127 3e-24 seq1135 125 1e-23 seq6 102 1e-16 seq1294 91.5 2e-13 >seq826 Length=185846 Score = 156 bits (172), Expect = 6e-33 Identities = 169/222 (76%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 70192 CAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAAT 70251 ||||||| |||| ||| |||| |||||||| |||||||||| |||||||| |||| Sbjct 159229 CAATCCAGCAGACAGGCGGATAATAATGTGCGCATGGAATCCCTCAGATTTGAGTAAAAT 159288 Query 70252 GGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGA--TGGCAAATTGTCA 70309 ||| || ||||| ||||| ||| ||||||||||| | ||| | ||| | ||| ||| Sbjct 159289 GGCTCTCCCACCTTGTCATTGTCTGGCTCAGTTT--CATGTATCAAGTGGAAGATTATCA 159346 Query 70310 TGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGC 70369 || | | || || || ||||| || ||||| || || || || || |||||||| || Sbjct 159347 TGTCTTTTATACCAAAGAAGTGCTGATATGGGTCTGGGAGTTCCATTCAACATTGCCAGT 159406 Query 70370 TATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTG 70411 ||||| |||| || || |||||||||||||| || |||||| Sbjct 159407 TATTCCTTGTTAACTCATATGATTGCTCACATCACTGGCCTG 159448 >seq28624 Length=432676 Score = 127 bits (140), Expect = 3e-24 Identities = 332/502 (66%), Gaps = 12/502 (2%) Strand=Plus/Plus Query 96824 TGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGG 96883 ||| || || || ||| | | |||||||| | || |||| ||| ||||| || Sbjct 58240 TGGTCTTGTTCCCATGTTGCGGGTGTACAATAACACAGCAAGATATGTTGATCAGGGTGG 58299 Query 96884 CAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGA 96943 ||||||||| || || ||| | ||| ||||| | ||||| |||||||| || || || || Sbjct 58300 CAATAAACGTCCTGGAGCTTTTGCCATCTACCTAGAACCCTGGCACGCTGATGTATTCGA 58359 Query 96944 CTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTA 97003 ||| | || | || ||| |||| ||||| | ||| ||||| || ||||||| Sbjct 58360 ATTTTTGGATTTAAAAAAGAACACTGGTAAGGAAGAAGTACGTGCCAGAGAACTGTTTTA 58419 Query 97004 TGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCT 97063 ||| |||||| | ||||| |||||||||| | || | | || | |||||||| Sbjct 58420 TGCTCTCTGGATCCCAGACCTGTTCATGAAAAGAGTTGAAAAGAATGAGAATTGGAGCCT 58479 Query 97064 AATGTGCCC---CGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGAGGC 97120 ||||| || |||| || |||||||| | || || ||||| ||||| |||||| Sbjct 58480 CATGTGTCCACATGACT-GT--CCCGGTCTTGCAGACTGTTGGGGGGAAGAATTTGAG-- 58534 Query 97121 CAAG---TACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAGA 97177 ||| || || || |||| ||| || | | ||| || | | Sbjct 58535 -AAGCTTTATGAAAAATATGAAGAAGAAAAGAGATTTGTCAAGCAAGTTAGGGCTCAAAT 58593 Query 97178 ACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAA 97237 ||||||| || || || || || || || ||||| || || | || || ||||| Sbjct 58594 TTTGTGGAAAGCTATTGTTGAAGCACAAGTGGAAACTGGCACACCATTTATGCTTTACAA 58653 Query 97238 GGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCT 97297 || | || | || |||||||||| | || ||||| || || || |||||| Sbjct 58654 AGACTCTTGCAACAGAAAGAGCAACCAACAAAATTTAGGCACTATTAAATGCAGCAATCT 58713 Query 97298 GTGCACGGAAATTGTAGAGTAC 97319 || |||||||||||||| ||| Sbjct 58714 CTGTACGGAAATTGTAGAATAC 58735 Score = 116 bits (128), Expect = 5e-21 Identities = 318/487 (65%), Gaps = 0/487 (0%) Strand=Plus/Plus Query 97774 ACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGT 97833 ||||||| ||||| || || | | || || ||||| || ||| | ||| | ||| | Sbjct 59202 ACGGTTTAAGAAATTCGCTGTTACTAGCTCCAATGCCTACAGCTTCTACTGCACAAATTC 59261 Query 97834 TTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGT 97893 |||| || ||| || ||||| |||||||| ||||| || || ||| | | | Sbjct 59262 TTGGTAACAATGAGTCCTTTGAGCCGTTCACTTCAAATATATATCAGCGCAGAGTTTTAT 59321 Query 97894 CTGGAGAGTTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACGGCTCAATCTGT 97953 |||| || || || | || || | ||||||| ||| || | | | |||| Sbjct 59322 CTGGCGAATTCCAGGTCGTAAATCACCATCTTCTTCGAGATTTGACACAGGCCGAGCTGT 59381 Query 97954 GGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACCA 98013 || | || || ||| | | || || |||| ||||| ||||||||||| ||| | Sbjct 59382 GGGATGACGATATGAAGAATCTTATAATTCACAATAATGGCTCCATTCAAAATATTGAAA 59441 Query 98014 TCATCCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGC 98073 || ||| |||| | | | ||||| || || |||||||| | ||| || Sbjct 59442 GTATACCGAAAGATATCAGGGAGCTATACAAAACAGTATGGGAGATATCAGTCAAAACTA 59501 Query 98074 TGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGT 98133 || | |||||||| |||||||||| | || || || || |||||||| || | Sbjct 59502 CAATTCAGATGGCTGCAGACAGAGGTGCTTTTATCGATCAAAGCCAATCGTTTAACATTC 59561 Query 98134 ACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAACAAGG 98193 ||||||| ||||| | ||| || |||| || || || || |||| ||||| | || Sbjct 59562 ACGTTGCTGAGCCAAATTACGGTAAATTGACATCAATTCATTTCCACGCTTGGAAGATGG 59621 Query 98194 GCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTA 98253 | | || || || ||||| ||| || | || || | ||| | || ||||| | ||| | Sbjct 59622 GTTTGAAAACTGGAATGTATTATTTGCGGACGAAACCCGCCGCAAACGCCATTCAATTCA 59681 Query 98254 CGGTGGA 98260 | || || Sbjct 59682 CTGTAGA 59688 >seq1135 Length=738686 Score = 125 bits (138), Expect = 1e-23 Identities = 143/191 (75%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 50130 AGAGCTGGCCCGTAGAGTATATAATCTACACGGCATCCTTTCCGAGTGCACTCACCGGAG 50189 |||| ||||| || ||||| ||||||||||||||| | ||||||||| || | ||||| | Sbjct 208266 AGAG-TGGCCAGTGGAGTACATAATCTACACGGCAACATTTCCGAGTTCATTGACCGGGG 208208 Query 50190 CCGATTTGACCATATTCGCAGCGTGCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGA 50249 | || || | ||||| | | |||||| || ||| | || |||||| | | |||| Sbjct 208207 CAGACCTGGCTATATTTACGGGGTGCTTCGCATACGTGGCTGATGTGAGTTCACTAGAGA 208148 Query 50250 ATCGCACGCTACGAGTGGGCATCTTGGATGCCGTCTACCTGAGCACGATGCCAACCGGTG 50309 || | || || |||||||||| |||||||| ||||| ||||||| ||||| || || Sbjct 208147 ATAGGACCCTCAGAGTGGGCATATTGGATGCAGTCTATATGAGCACTATGCCTACAGGAA 208088 Query 50310 TGGCGATCGGT 50320 | || ||||| Sbjct 208087 TTGCCCTCGGT 208077 >seq6 Length=1691400 Score = 102 bits (112), Expect = 1e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || ||||| || || |||||||||||||| || || || ||||||||| | || |||||| Sbjct 1115274 GTCGCATTTGCTGCTGTAGAGGGCATCTTTTTCTCTGGCAGTTTTGCGTCAATATTTTGG 1115215 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || ||||| || || |||||||| ||| |||| ||| || || || || ||||| || Sbjct 1115214 CTGAAGAAACGTGGTCTCATGCCTGGATTGACTTTCAGCAATGAATTGATTTCTCGGGAT 1115155 Query 125550 GAGG 125553 |||| Sbjct 1115154 GAGG 1115151 >seq1294 Length=78528 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 126740 CAGGAGTACCGAGTCTGATGCCGCTTGGTCTGAGAGCGCTCTTGTCTCCGGGTACTGTGT 126799 ||| | |||| || | || || || || | || || ||||| || || ||||| || | Sbjct 34068 CAGCATTACCAAGACGTATTCCACTGGGGTTTAGCGCACTCTTATCGCCCGGTACAGTAT 34009 Query 126800 TTTTGTTGCAAGCGATTCTGCACAGTTCGAGGATGCGCTCTGCCGGTGCTCCTGCGAGTC 126859 | ||||||||||| || ||||| ||||| || ||||| || || | || || ||| | Sbjct 34008 TCTTGTTGCAAGCAATGCTGCATAGTTCCAGTATGCGTTCAGCTCGCGCGCCGCTGAGAC 33949 Query 126860 CCACACTGCGCAAATCCACTAGAATCAGATGCACATCGGTACCGCCAGTGGTGACGGTGT 126919 |||||| ||||| || ||||| ||||| || || || || || || | || | || Sbjct 33948 CCACACCGCGCATGTCTACTAGTGCGAGATGGACGTCTGTTCCACCCGTAGCGATGTCGT 33889 Query 126920 AGCCTCGTGA 126929 |||| || || Sbjct 33888 AGCCACGCGA 33879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740781515854520