Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq852 286 3e-72 seq154 123 2e-23 seq397 114 1e-20 seq504 95.1 1e-14 seq27819 86.0 5e-12 seq222 82.4 6e-11 >seq852 Length=562639 Score = 286 bits (316), Expect = 3e-72 Identities = 850/1287 (66%), Gaps = 38/1287 (3%) Strand=Plus/Plus Query 100112 TTCATAGCATTTAACAAGTCGCCGTTGTCGGCGTCGATTTCCCAAGCGAATAACCCGCCC 100171 |||||||||||||| || || ||||| || |||||||| ||||| ||||| | || || Sbjct 32595 TTCATAGCATTTAATAAATCTCCGTTATCCGCGTCGATCTCCCACGCGAAAAGACCACCG 32654 Query 100172 AATCCGTTTTGATCT-ACATAACTATTTTTTGCTAATACAGAATCGA-CACTGTCAAAAG 100229 | || | ||| ||||| || ||| | | ||||| ||| || |||| | | Sbjct 32655 AGCTTATTATT-TCTGACATATTTACCTTTCTCAATAACAGA-TCGTGCATTGTCGTACG 32712 Query 100230 AGATTAAATCGCCCTTGTCTTTGT--TAAAAACGTAAGCCGCTTTAGCGACCGAATCAAA 100287 |||| ||| || |||| | |||| || || | ||||| |||||| |||| | Sbjct 32713 TAATTAGATCACC--TGTCGAAGGCCTAAACACATACGGCGCTTGAGCGACGCTATCATA 32770 Query 100288 TTTGTA-----AATGTACTTGTTCAATT-CGTTTTCAATTTGGCGATAATCGACAACGCC 100341 | | | | | | | || ||||| | || |||| | | ||||| || || || Sbjct 32771 ATGGAACTCCCATTTTCCCTGCGCAATTTCATTCGCAATCTCTCTGTAATCCACCACACC 32830 Query 100342 GTCTTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAAATAGTTGTCACCGTC 100401 ||||| ||| || || | || || || | ||| |||||||||| |||| || Sbjct 32831 GTCTTGCCATGTACCTTTGACAGGACCAGAAGCATTGCCTGTGAAGGGAATGTCGTTTTC 32890 Query 100402 ATAGCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCG 100461 || || || || ||||| || || |||||||| ||||| || || | | || Sbjct 32891 GTACCCGTGAACACCAGTCCATCCACGTCCGTACATAGCAACACCAACTACGACCTTCTT 32950 Query 100462 CGGGTCCACGCCCTG-GTTCGTGAGCAATTTCACGGCGTGATCCGTGTTGTACAGCTCGT 100520 ||| | || || || | | || | ||| || || ||| || |||| || | Sbjct 32951 CGGATTGACTCCTTGAGCTAACAAGTA-TTTAACACCGAAATCAGTCGTGTATGTTTCCT 33009 Query 100521 TCGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAAATCGGTGTTTGACCAGG 100580 | || ||||| || ||||| |||| || |||| || | | ||| ||||| | Sbjct 33010 TAGGATTCCAGGCTGGAGCGTACAGAGATGTCTGGTGACCTAGGGTGTCGTTCGACCACG 33069 Query 100581 CGCCTTTAAAATCGTAGCTCATAAGAAATATTTTATCGA-GAAGCTTT-TGCGCAACGTC 100638 | || || || |||||| |||| | || || | || | | || | | ||||| || Sbjct 33070 CTCCCTTGAAGTCGTAGTTCATGAAGAAGATGTGGTCCATGTAGTTCTGTGCGCGACT-- 33127 Query 100639 GTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCGTACGT 100698 ||| | ||||| ||| ||||| | || | |||||| || || | ||||||| | Sbjct 33128 GTAGTCGACCACTTGAATCTTGTCCCAACCAGCACTGATAGCTGAAGTTAGCTCGTACTT 33187 Query 100699 TTTGCCCGTTTGCAGTTG-TAGCTGGTCCAGCATCGCGCGCAATTCCTTCAGTAAAATGT 100757 ||||| || |||| || || || || |||||| | || | ||| |||| ||| | Sbjct 33188 CTTGCCAGTA-GCAGATGATAACTCGTTGAGCATCTCACGAAGTTCTTTCATTAAGAGCA 33246 Query 100758 TGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGTCGGGTTGGCGCCTTTGCCGCCCG 100817 || || ||| | || ||| || || | ||||| ||||| |||||||| | Sbjct 33247 CATAGGTTTCGCCATCCTTAGGACCG---CCGAGGTTAGGGTTAGCGCCCTTGCCGCCAG 33303 Query 100818 GAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTTCCACACCTGCAAAAATTCCTTGA 100877 | || ||||| || || || || || ||||| || |||||| | || |||||||| | Sbjct 33304 GGAATTCCCAATCGATATCGACACCATCAAAGAATTTCCACGTCATCAGGAATTCCTTAA 33363 Query 100878 CCGAGTCCACAAACACGCGCCGTTTTTCCGCATCGTGCATGAAATA----GAACGGGTCG 100933 | || | || || ||| || | || | | | || ||| ||| | ||| || || Sbjct 33364 CTGAATTGACGAA-ACGGTCCCTCTT--CACTTTGT-CATCAAAGAAGAAGAAAGGATCA 33419 Query 100934 GACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGTGCGGATTGGCCAGCTTGGCC 100993 | | ||||| || || || |||||||| ||||| | || || |||| |||| Sbjct 33420 GCAAGAGTCCAACCTCCAATAGACGGCAGGATTTTTAAGTCAGGTCTGGCTTGCTTCAAT 33479 Query 100994 GCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTTCCATGCGGACACGCCCTTTTGC 101053 | ||| || |||||||| ||||||||||| || || ||||| | || | |||||||| Sbjct 33480 GACATCAGTTGACCGAAGTTGCCCTTGTAAGGTTCATTCCAAGATGATAATCCCTTTTGT 33539 Query 101054 GGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGACTTTGAAATCTGAACGACCCTTG 101113 ||||| || | |||||||| |||||||| |||| || ||||| ||| ||||| || Sbjct 33540 GGTTTCTGGAGAGCGGCCCATGGATCGTGGATGGACACCTTGAAGTCTTCTCGACCGCTG 33599 Query 101114 CAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTTTTGAGGGCGTCGTTGAGGCCG 101173 || || || |||| |||| |||||||| || || | |||||||| ||| Sbjct 33600 CAAGACCGTTGCAAAGCTTGGAAACTGCCTTCGATTTCCTTCAAACTGTCGTTGATGCCA 33659 Query 101174 TCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATGCGAGAGATTGGGCAGCGGCACT 101233 || || || ||||| || ||||||||||| || ||||||| ||| || || | || | | Sbjct 33660 TCTCCCCCACAAATTGGGATGAACCCGTATAAAAGATGCGTGAGGTTTGGAATTGGAATT 33719 Query 101234 TTGTCTACCGGAAAATTGCGGCCGTACACGCCCCACTCTACAAAATACGCAGCGACGGTC 101293 ||||| || || || || ||| ||||| ||||| ||||| || || ||| |||| | Sbjct 33720 TTGTCCACAGGGAACTTCCGGGGATACACACCCCATTCTACGAAGTAGGCACCGAC-TAC 33778 Query 101294 TTGTCCTG----GCGCCGTCCGGGCTTGTTGTTCTCCCGCCAAACGTATTCCAGCGGAGA 101349 || ||| | || ||||||||| ||||| | | ||| ||||| || | Sbjct 33779 TTTTCCAGATGTTTGCTTGAAGGGCTTGTTCTTCTCTCCCATGGTGTAATCCAGGGGTGG 33838 Query 101350 CAAATGACCACCGTCCGTGTCCGCAAC 101376 || || | |||||||||||| || || Sbjct 33839 TAAGTGGCTACCGTCCGTGTCAGCTAC 33865 >seq154 Length=1330714 Score = 123 bits (136), Expect = 2e-23 Identities = 182/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 24873 ACCTTTTGTACATAATCGCGGCCCTTGACAAGTAGTACGTATGCGCAGCGCCCGAACCAA 24932 || || || || || || ||||| || || || | ||||| ||||| || | ||||| Sbjct 117442 ACTTTCTGAACGTAGTCTCGGCCTTTCACCAGCTGAACGTAAGCGCATCGATCAAACCAC 117383 Query 24933 AGCGCGTGTTGTTGCCACGGCTCGTCATCTTGCTCCCAGTTGTCCAAACCGCCGTCGCAG 24992 ||||||| |||| |||||| |||| || | |||||||| | || ||| ||||||||| Sbjct 117382 CGCGCGTGCTGTTCCCACGGGACGTCGTCGTTCTCCCAGTCTTTCAGACCTCCGTCGCAG 117323 Query 24993 TAAAAACATTTGACTTTGTCGCTACGGCCGGTGTAAAAGAAGCCAGCTTCTGCAAGTTTT 25052 || |||||||| ||| || | | |||||||||||||| || ||||| || | | Sbjct 117322 TAGAAACATTTAGTTTTATCCCCTTGCCCGGTGTAAAAGAATCCGGCTTCCGCCAACTCC 117263 Query 25053 TCGGGCCGTTGCTTCAAACCGCGTGGCCACTCTGTAAATGTGCGCAAACGCGCAGCTTCT 25112 |||||| ||| || | || ||||| || | || || |||| ||| || || || Sbjct 117262 TCGGGCTTTTGGCCCATGCAACGAGGCCAGTCGCTGAAGGTTCGCAGACGAGCCGCCTCC 117203 Query 25113 ATCGCATATTTGGGGTGC 25130 |||||| |||||| Sbjct 117202 GAGGCATATCGCGGGTGC 117185 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 25233 AAAAACGGGCATTGCGGCGCCCATTTTTGATGATCGCGAGCCGGGTCGTCGCCCGCCTCC 25292 ||||| || || || || |||||| | || ||||| | |||||| ||||| || | || Sbjct 117067 AAAAATGGACACTGGGGTGCCCATCTCTGGTGATCTCTAGCCGGATCGTCACCTTCGACC 117008 Query 25293 CAGCGCATAATCTCCACTTTGCAAAACGCGCAGCGCACTTCGTCGCCGCGTCCCAAGTAG 25352 ||||||||||| || |||||||| || ||||| | ||||||||| |||| ||| | || Sbjct 117007 CAGCGCATAATTTCGACTTTGCAGAAAGCGCATCTCACTTCGTCACCGCATCCGAGATAA 116948 Query 25353 TAGAACCCATTGGCGGCCATTTGTCGCGGCGACA 25386 || || ||||| || | |||| | || |||| Sbjct 116947 TAAAAACCATTTCTTGCAAGTTGTTGGGGTGACA 116914 >seq397 Length=962699 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| || || | || || | ||| | ||||| || ||||||||||||||||||| Sbjct 58439 CCTCCACGTAAACGCAAGACGAGGTGAAGAGTAGATTCTTTTTGAATATTGTAATCCGAA 58498 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || |||| || | || || ||||| |||| | || ||||||||| || Sbjct 58499 AGAGTACGTCCGTCTTCTAATTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGTGGT 58558 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || ||||| |||||| |||||| | | | |||||| ||||| | Sbjct 58559 ATGCCTTCCTTGTCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGGATGGCTCAACT 58618 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| || |||||||| ||||||||||| ||||||||||||||| Sbjct 58619 TCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCATT 58666 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18830 AACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC 18889 || |||| ||| | || ||||||||||| || ||||| || | || || | || Sbjct 56402 AAAACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGACCATCT 56461 Query 18890 TCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCG 18949 ||||| |||||||||||| |||| | ||||||||| || || | ||| || ||||| Sbjct 56462 TCCAGTTGTTTACCCGCAAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTCC 56521 Query 18950 GCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTT 19009 || || || || | ||| || ||| ||| ||| || | ||| |||||| Sbjct 56522 TGGATCTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACCTCCAAGGTTATGGTT 56581 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || | ||||| ||||| || ||||| Sbjct 56582 TTACCGGTCAGGGTTTTAACAAATATCTGCAT 56613 >seq504 Length=80497 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||||| ||| || ||||| | |||| || || ||||| || || ||||| |||| Sbjct 73117 TTCCTCCTCTCAATCTCAACACTAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCCG 73058 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 || ||| | | || ||||| ||||||||||| | ||||| | ||| || || || Sbjct 73057 ACAGTGTACGGCCATCTTCCAGTTGTTTACCCGCGAAGATAAGACGCTGTTGGTCAGGGG 72998 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||||| ||||| |||||| ||| || | | | ||| || ||||| Sbjct 72997 GAATTCCCTCCTTGTCCTGAATTTTGGCTTTGACATTCTCAATAGTGTCAGATGGCTCAA 72938 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 ||| | ||||| || || || || | || |||||||| || |||||| Sbjct 72937 CTTCCAGTGTAATAGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCATT 72888 >seq27819 Length=1354 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||||||| ||||| || | |||| || || ||||| || || ||||| |||| | Sbjct 1313 CCTCCTCGCAATCTTAATACTAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCCGAC 1254 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||| || || || ||| | ||||| | || || || ||| Sbjct 1253 AGTGTACGGCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGGA 1194 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| |||||| ||| || | ||| ||| || || || | Sbjct 1193 ATCCCCTCTTTGTCCTGAATTTTGGCTTTGACATTCTCGATAGTGTCAGATGGTTCAACT 1134 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||| || || || | ||||||||||| || ||||| Sbjct 1133 TCCAAAGTGATGGTCTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 1087 >seq222 Length=543901 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34581 GGCGGCGTGGGACTGAACTTAACCGGCGGCAATCACATAATTATGTTGGAGCCCCACTGG 34640 ||||||||||| |||||||| ||||| ||| ||| | | || |||| || |||||| Sbjct 125755 GGCGGCGTGGGGCTGAACTTGTGCGGCGCCAACCACCTGCTGCTGCTGGACCCGCACTGG 125814 Query 34641 AACCCGCAGATCGAACTGCAGGCGCAAGACCGCATCCACCGCATGGGCCA 34690 ||||||||| | || | |||||||| |||||| | ||||| | || || Sbjct 125815 AACCCGCAGCTGGAGCGCCAGGCGCAGGACCGCGTGTACCGCGTCGGACA 125864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414421338029938