Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq397 98.7 6e-16 seq504 84.2 1e-11 >seq397 Length=962699 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || || | ||| ||||| || | || | || || |||||||| ||||||||||| || Sbjct 58439 CCTCCACGTAAACGCAAGACGAGGTGAAGAGTAGATTCTTTTTGAATATTGTAATCCGAA 58498 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 | | | || ||| || |||||||| || || || || || ||||| || | ||| Sbjct 58499 AGAGTACGTCCGTCTTCTAATTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGTGGT 58558 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACG 33322 |||||||| || || ||| |||||| ||| ||| || ||| || | ||| Sbjct 58559 ATGCCTTCCTTGTCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGGATGGCTCAACT 58618 Query 33323 TCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||| || || ||||| || || | |||||| || ||||||||||| Sbjct 58619 TCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCAT 58665 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 || || || ||||| | || || ||||| || || ||||| || |||||| || | Sbjct 57995 CGTAATACTAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTGCGCCCA 58054 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || ||||||||||| ||| |||||| | | ||| ||||| | || || || ||||| Sbjct 58055 TCTTCCAATTGCTTACCAGCAAATATCAGTCTTTGTTGGTCTGGTGGAATACCCTCTTTG 58114 Query 33275 TCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATC 33334 || ||| |||||| ||| || ||||| || | || || ||||| || Sbjct 58115 TCTTGAATTTTAGCTTTTACATTTTCTATGGTGTCAGAAGGCTCCACCTCGAGAGTAATG 58174 Query 33335 GTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || |||||||| |||||||| ||||| Sbjct 58175 GTTTTACCGGTGAGAGTTTTAACGAAAATCTGCAT 58209 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| ||||| ||| | || |||||||| || || || || || |||||| || | Sbjct 56627 CGCAGCACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGACAAAGTGCGACCA 56686 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| ||| || || || || | ||| |||||||| | ||| ||||||||||| Sbjct 56687 TCTTCCAGTTGTTTACCCGCGAAGATAAGACGCTGCTGGTCTGGGGGAATGCCTTCTTTG 56746 Query 33275 TCGCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || |||| ||| || || ||| ||| ||||| |||| || |||| || Sbjct 56747 TCCTGAATCTTGGCC---TTCACATTTTCAATGGTGTCAGAAGGTTCCACCTCCAAGGTG 56803 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| || || || ||||| || || || |||||| Sbjct 56804 ATGGTTTTACCAGTCAGGGTTTTAACAAAGATCTGCATG 56842 >seq504 Length=80497 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/231 (68%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || | ||| || ||||||| || || ||||| || || ||||| || || Sbjct 74123 ACCTCCTCTCAATCTCAATACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGA 74064 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 || | | ||| ||||||||||| || ||| || | |||||| ||||| | ||| Sbjct 74063 CAGTGTACGGCCGTCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGG 74004 Query 33262 TATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 || || ||||| || || | ||| || || ||| ||| ||||| || | Sbjct 74003 AATCCCCTCTTTGTCTTGAATTTTGGCC---TTCACATTTTCAATAGTGTCAGATGGCTC 73947 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||| |||| || || || ||||| || || || || || || || ||||| Sbjct 73946 AACCTCCAATGTGATGGTCTTTCCGGTGAGTGTCTTCACAAAGATCTGCAT 73896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318661136297346