Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq504 113 3e-20 seq397 105 5e-18 seq154 87.8 1e-12 seq27819 82.4 5e-11 >seq504 Length=80497 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||||||| ||||| ||||| || ||| ||||| ||||| || || || Sbjct 72887 CCTCCTCTCAATCTCAACACTAAATGCAGAGTGGATTCTTTCTGAATGTTGTAGTCTGAC 72828 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | ||| |||| |||||||| || || ||||| || | ||||| ||||| |||| Sbjct 72827 AGTGTACGGCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAGGA 72768 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || ||||| || |||||| ||| || | ||| ||||| | ||||| || Sbjct 72767 ATCCCCTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATTGTATCCGATGGCTCAACT 72708 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | ||||||||||| || ||||| Sbjct 72707 TCTAATGTAATAGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 72661 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||||||||||||||| || || ||||| || ||| ||||| || || || || || Sbjct 74123 ACCTCCTCTCAATCTCAATACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGA 74064 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | ||| | || |||||||| || || ||||| || | ||||| ||||| | || Sbjct 74063 CAGTGTACGGCCGTCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGGG 74004 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| ||| |||||| || || | ||| ||| || | ||||| || Sbjct 74003 AATCCCCTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATAGTGTCAGATGGCTCAAC 73944 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || || || ||||| | ||||||||||| || ||||| Sbjct 73943 CTCCAATGTGATGGTCTTTCCGGTGAGTGTCTTCACAAAGATCTGCAT 73896 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||||||| ||||| ||||| || ||| || || || || || || || Sbjct 73115 CCTCCTCTCAATCTCAACACTAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTCCGAC 73056 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 | | ||| |||| |||| |||||| || || || || | || || ||||| | || Sbjct 73055 AGTGTACGGCCATCTTCCAGTTGTTTACCCGCGAAGATAAGACGCTGTTGGTCAGGGGGA 72996 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | || || || || |||||| |||||| | ||| ||| || | ||||| || Sbjct 72995 ATTCCCTCCTTGTCCTGAATTTTGGCTTTGACATTCTCAATAGTGTCAGATGGCTCAACT 72936 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || || | ||||| ||||| || ||||| Sbjct 72935 TCCAGTGTAATAGTCTTGCCAGTGAGTGTCTTGACAAAGATCTGCAT 72889 >seq397 Length=962699 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||| ||||| | ||| | || || ||||| || || || || Sbjct 58475 TCTTTTTGAATATTGTAATCCGAAAGAGTACGTCCGTCTTCTAATTGCTTGCCCGCGAAA 58534 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| || ||||| || | |||| ||||| || ||| ||||||| ||| || | Sbjct 58535 ATCAATCGCTGCTGATCAGGTGGTATGCCTTCCTTGTCTTGAATTTTTGCTTTTACATTT 58594 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||| | ||||| || || | || || |||||||| |||||||| |||||| Sbjct 58595 TCAATTGTATCGGATGGCTCAACTTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACA 58654 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 58655 AAAATTTGCAT 58665 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 43909 TAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCAT 43967 ||| || ||||| || || ||||| || || || || || | || || ||| ||| Sbjct 57997 TAATACTAAATGAAGAGTAGATTCTTTCTGGATGTTGTAGTCTGACAAAGTG-CGCCCAT 58055 Query 43968 CGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTAT 44027 | |||||||| || || |||||||||| | ||| ||||| | || | ||| ||||| | Sbjct 58056 CTTCCAATTGCTTACCAGCAAATATCAGTCTTTGTTGGTCTGGTGGAATACCCTCTTTGT 58115 Query 44028 CTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTG 44087 || |||||| ||| || | | | || || | |||||||| |||| ||||| | Sbjct 58116 CTTGAATTTTAGCTTTTACATTTTCTATGGTGTCAGAAGGCTCCACCTCGAGAGTAATGG 58175 Query 44088 TTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||||| | ||| || || || || ||||| Sbjct 58176 TTTTACCGGTGAGAGTTTTAACGAAAATCTGCAT 58209 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGT 43970 ||| | ||| || ||| ||| || || || ||||| || | || || || |||| | Sbjct 57772 CACTAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGACAAAGTG-CGACCATCTT 57830 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 |||| ||||| ||||| || ||||| | ||||| || |||| | |||||||| || Sbjct 57831 CCAACTGTTTACCTGCGAAAATCAATCTCTGCTGATCTGGAGGAATGCCTTCTTTGTCCT 57890 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 || || || || | ||| |||||| | | ||| || || | || ||||||| Sbjct 57891 GGATCTTGGCCTTCACATTCTCAATAGTATCCGATGACTCAACTTCTAAGGTTATTGTTT 57950 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | || ||||||||||| ||||| || |||||| Sbjct 57951 TGCCAGTTAAAGTCTTTACAAAGATCTGCATG 57982 >seq154 Length=1330714 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 10927 AAAACATTTGTAGATTGGCCTGTTGTGTTTTTGTCGCCGCAACTGTTAGCCAAAAATGGA 10986 |||||||| | | ||||| || || ||||| || |||| | || | |||||| Sbjct 116883 AAAACATTCGAGAAATGGCCCGTATCTTTCTTGTCACCCCAACAACTTGCAAGAAATGGT 116942 Query 10987 TTTTACTATTTGGGAAGAAGTGATGAGGTGAGATGTGCTTTTTGTAAAGTAGAAATTATG 11046 ||||| ||| | ||| | |||| || |||||||| ||||| || ||||| ||||||||| Sbjct 116943 TTTTATTATCTCGGATGCGGTGACGAAGTGAGATGCGCTTTCTGCAAAGTCGAAATTATG 117002 Query 11047 CGTTGGAAAGAAGACGACGATCC 11069 || ||| |||| |||||||| Sbjct 117003 CGCTGGGTCGAAGGTGACGATCC 117025 >seq27819 Length=1354 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||||| |||||| || || ||||| || ||| || || ||||| || || ||| Sbjct 858 ACCTCCTCGCAATCTCAATACTAAATGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGA 799 Query 43954 TA-ATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 | | || || |||| || ||||| || || ||||| || | || || ||||| ||| Sbjct 798 AAGAGTG-CGTCCATCTTCTAATTGCTTGCCGGCAAAAATAAGTCGCTGTTGGTCAGGAG 740 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | || ||||| ||| ||||| || || | ||| || |||| ||||| | Sbjct 739 GAATCCCCTCTTTGTCTTGGATTTTAGCCTTTACATTCTCAATTGTGTCTGATGGCTCAA 680 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || || || || || || | ||||||||||| || ||||| Sbjct 679 CTTCTAATGTGATGGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354647983888596