Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq852 262 3e-65 seq154 131 1e-25 seq397 109 5e-19 seq27819 96.9 3e-15 seq504 93.3 4e-14 >seq852 Length=562639 Score = 262 bits (290), Expect = 3e-65 Identities = 643/963 (67%), Gaps = 15/963 (2%) Strand=Plus/Plus Query 101018 TAATCGACAACGCCGTCTTCCCAAGTACCGGTCACGGGCCCGGCAGCTGTGCCTGTGAAA 101077 ||||| || || ||||||| ||| ||||| | || || || | ||| |||||||||| Sbjct 32817 TAATCCACCACACCGTCTTGCCATGTACCTTTGACAGGACCAGAAGCATTGCCTGTGAAG 32876 Query 101078 TAGTTGTCACCGTCATAGCCTGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCC 101137 |||| || || || || || ||||| || || |||||||| ||||| || Sbjct 32877 GGAATGTCGTTTTCGTACCCGTGAACACCAGTCCATCCACGTCCGTACATAGCAACACCA 32936 Query 101138 ACAATAATTTTGCGCGGGTCTACGCCCTG-GTTCGTGAGCGATTTAACAGCGTAATCCGT 101196 || | | || ||| | || || || | | || |||||||| || |||| || Sbjct 32937 ACTACGACCTTCTTCGGATTGACTCCTTGAGCTAACAAGT-ATTTAACACCGAAATCAGT 32995 Query 101197 GTTGTACAGCTCGTTTGGGTTCCAACTCGGCGCGTAGAGTGTAGTTTGATAGCCCAGATC 101256 |||| || || || ||||| || ||||| || | || || | || || Sbjct 32996 CGTGTATGTTTCCTTAGGATTCCAGGCTGGAGCGTACAGAGATGTCTGGTGACCTAGGGT 33055 Query 101257 GATGTTTGACCACGCGCCTTTGAAATCGTAGCTCATGAGAAATATTTTATCGAGGAACTT 101316 | ||| |||||||| || ||||| |||||| |||||| || || | || | | | || Sbjct 33056 GTCGTTCGACCACGCTCCCTTGAAGTCGTAGTTCATGAAGAAGATGTGGTCCATGTAGTT 33115 Query 101317 TTGCGCAAGATCGTATTTTACTACAGCAATTTTGTCGTGACCCGAACTAATTGCACTTGT 101376 || || || ||| | || || ||| ||||| ||| | ||| || || || Sbjct 33116 CTGTGCGCGACTGTAGTCGACCACTTGAATCTTGTCCCAACCAGCACTGATAGCTGAAGT 33175 Query 101377 TAATTCGTATGTTTTGCCCGTTTGCAGTTGC-AACTCGTCCAGCATTGCGCGCAATTCTT 101435 || ||||| | ||||| || |||| || ||||||| ||||| | || | ||||| Sbjct 33176 TAGCTCGTACTTCTTGCCAGTA-GCAGATGATAACTCGTTGAGCATCTCACGAAGTTCTT 33234 Query 101436 TCAGTAAAATGTTGTACGTGTCAGCGTCGCGTTCTTTGTT--GCCGAGTGTTGGGTTGGC 101493 ||| ||| | || || || | || ||| | |||||| | ||||| || Sbjct 33235 TCATTAAGAGCACATAGGTTTCGCCATC-----CTTAGGACCGCCGAGGTTAGGGTTAGC 33289 Query 101494 GCCTTTACCACCCGGAAACTCCCAATCGATGTCTACCCCGTCAAAAAATTTCCAAACCTG 101553 ||| || || || || || ||||||||||| || || || ||||| |||||||| | Sbjct 33290 GCCCTTGCCGCCAGGGAATTCCCAATCGATATCGACACCATCAAAGAATTTCCACGTCAT 33349 Query 101554 CAAAAATTCTTTGACAGAATCCACAAACACACGCCGTTTTATCGC-GTCGTGCATATAAT 101612 || ||||| || || |||| || || || || | || | ||| | || | || Sbjct 33350 CAGGAATTCCTTAACTGAATTGACGAA-ACGGTCCCTCTTCACTTTGTCAT-CAAAGAAG 33407 Query 101613 A-GAACGGGTCGGACAATGTCCAGCCGCCGATGGACGGCAAAATTTTAAGGTGTGGATTG 101671 | ||| || || | | ||||| || || || ||||||| ||||| | || || || Sbjct 33408 AAGAAAGGATCAGCAAGAGTCCAACCTCCAATAGACGGCAGGATTTTTAAGTCAGGTCTG 33467 Query 101672 GCCAATTTGGCCGCCATTAGCTGACCAAAGTTGCCTTTGTAGGGCTCGTTCCAAGCAGAT 101731 || || | ||| || ||||| |||||||| ||||| || || ||||||| ||| Sbjct 33468 GCTTGCTTCAATGACATCAGTTGACCGAAGTTGCCCTTGTAAGGTTCATTCCAAGATGAT 33527 Query 101732 ACACCTTTCTGCGGTTTTTGTATTGCGGCCCAAGGATCGTGGATAGCAACTTTAAAATCT 101791 | || || || ||||| || | |||||||| ||||||||||| | || || || ||| Sbjct 33528 AATCCCTTTTGTGGTTTCTGGAGAGCGGCCCATGGATCGTGGATGGACACCTTGAAGTCT 33587 Query 101792 GAACGGCCCTGGCAAGAACGTTGCAACGCTTCAAAACTACCGGGTATGGTTTTGAGGGCG 101851 || || |||||| |||||||| |||| ||||| || || || | | Sbjct 33588 TCTCGACCGCTGCAAGACCGTTGCAAAGCTTGGAAACTGCCTTCGATTTCCTTCAAACTG 33647 Query 101852 TCGTTAAGGCCATCGCCGCCACAAATGGGTATGAACCCGTACAACAAATGTGAGAGGTTG 101911 ||||| | |||||| || |||||||| || ||||||||||| || | ||| | |||||| Sbjct 33648 TCGTTGATGCCATCTCCCCCACAAATTGGGATGAACCCGTATAAAAGATGCGTGAGGTTT 33707 Query 101912 GGCAGCGGCACTTTGTCCACCGGAAAGTTGCGACCATACACGCCCCATTCTACAAAATAC 101971 || | || | ||||||||| || || || || |||||| ||||||||||| || || Sbjct 33708 GGAATTGGAATTTTGTCCACAGGGAACTTCCGGGGATACACACCCCATTCTACGAAGTAG 33767 Query 101972 GCA 101974 ||| Sbjct 33768 GCA 33770 >seq154 Length=1330714 Score = 131 bits (144), Expect = 1e-25 Identities = 142/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 23538 TGCACGTAGTCGTAGCCCTTTACGAGCCGCACGTATGTGCAGCGATCAAACCAACGTGCG 23597 || |||||||| ||| || || ||| | ||||| | ||| ||||||||||| || ||| Sbjct 117436 TGAACGTAGTCTCGGCCTTTCACCAGCTGAACGTAAGCGCATCGATCAAACCACCGCGCG 117377 Query 23598 TGTTCTTCCCACGGCTCGTCGGTGCTTTCCCAGTCTTTGAGGCCGCCGTCGCAATGAAAA 23657 || | ||||||||| ||||| | | ||||||||||| || || |||||||| | ||| Sbjct 117376 TGCTGTTCCCACGGGACGTCGTCGTTCTCCCAGTCTTTCAGACCTCCGTCGCAGTAGAAA 117317 Query 23658 CATTTGACCCTGTCACCCTTG-CCGGTGTAATAAAAACCGGCTTCAGCTAATTGCTCTGG 23716 ||||| | || |||||| ||||||||| | || |||||||| || || | ||| || Sbjct 117316 CATTTAGTTTTATC-CCCTTGCCCGGTGTAAAAGAATCCGGCTTCCGCCAACTCCTCGGG 117258 Query 23717 CTTTTG 23722 |||||| Sbjct 117257 CTTTTG 117252 >seq397 Length=962699 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| ||||| | ||| || | || || |||||||||||||| || |||||||| Sbjct 58439 CCTCCACGTAAACGCAAGACGAGGTGAAGAGTAGATTCTTTTTGAATATTGTAATCCGAA 58498 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| ||||| ||||| |||||||| |||| | | ||| ||||| || Sbjct 58499 AGAGTACGTCCGTCTTCTAATTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGTGGT 58558 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||| ||||| ||||||| ||| || | ||| | |||| || || | Sbjct 58559 ATGCCTTCCTTGTCTTGAATTTTTGCTTTTACATTTTCAATTGTATCGGATGGCTCAACT 58618 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||| || ||||| || || || ||||| ||||||||||||||| Sbjct 58619 TCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCATT 58666 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 || ||||| ||| || || || ||||| || ||||| || ||| || ||| | ||| Sbjct 56629 CAGCACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGACAAAGTGCGACCATC 56688 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||||| |||||| ||||| | ||||| | ||| || || ||| | |||||||||||| Sbjct 56689 TTCCAGTTGTTTACCCGCGAAGATAAGACGCTGCTGGTCTGGGGGAATGCCTTCTTTGTC 56748 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||| || ||||| | ||| | || ||||||| |||| ||| ||||| Sbjct 56749 CTGAATCTTGGCCTTCACATTTTCAATGGTGTCAGAAGGTTCCACCTCCAAGGTGATGGT 56808 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || |||| ||||| ||||| || ||||| Sbjct 56809 TTTACCAGTCAGGGTTTTAACAAAGATCTGCAT 56841 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 |||||||| ||| || || || ||||| || ||||| || ||| || ||| | ||| Sbjct 57085 CAACACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGACAAAGTGCGACCATC 57144 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||||||| ||||| | ||||| | ||| ||||| ||| | ||| || ||||| Sbjct 57145 TTCCAATTGTTTACCCGCGAAGATAAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 57204 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 || || ||||| | | | || ||| ||||||| || | ||| ||||| Sbjct 57205 CTGGATCTTGGCCTTCACATTTTCGATAGTGTCGGAAGGTTCCACCTCTAAGGTTATGGT 57264 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || |||| ||||| ||||| || ||||| Sbjct 57265 TTTACCAGTCAGGGTTTTAACAAAGATCTGCAT 57297 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| |||| ||| || || || ||||| || ||||| || ||| || || ||| Sbjct 57313 CAATACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCGGACAATGTGCGCCCATC 57372 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 ||| | |||||| || || | ||||| | ||| ||||| ||| | |||||||||||| Sbjct 57373 TTCTAGTTGTTTACCAGCGAAGATAAGTCGCTGCTGATCTGGGGGAATGCCTTCTTTGTC 57432 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||| || ||||| | ||| | || ||||||| ||||| ||| ||||| Sbjct 57433 CTGAATCTTGGCCTTCACATTTTCAATGGTGTCAGAAGGTTCCACTTCCAAGGTGATGGT 57492 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| ||||||| ||||| ||||| || ||||| Sbjct 57493 TTTACCGGTCAGGGTTTTAACAAAGATCTGCAT 57525 >seq27819 Length=1354 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 |||||||| || || || || ||||| || || ||||| || || |||||||| || | Sbjct 1313 CCTCCTCGCAATCTTAATACTAAATGCAGAGTGGATTCCTTCTGGATGTTGTAGTC--CG 1256 Query 20042 ATAGTTTTAGA--ATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | | |||||||||||| ||||| ||| | ||||| | ||||| || || Sbjct 1255 ACAGTGTACGGCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGG 1196 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| |||||| ||| || | | | || || ||||| Sbjct 1195 GAATCCCCTCTTTGTCCTGAATTTTGGCTTTGACATTCTCGATAGTGTCAGATGGTTCAA 1136 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || ||||| || ||||| | ||||||||||| || ||||| Sbjct 1135 CTTCCAAAGTGATGGTCTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 1087 >seq504 Length=80497 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 ||||||||| || |||||||| ||||| || || |||||||| || |||||||| || Sbjct 72889 TTCCTCCTCTCAATCTCAACACTAAATGCAGAGTGGATTCTTTCTGAATGTTGTAGTCTG 72830 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 || || |||||||||||| ||||| ||| | ||||| | ||||| || | Sbjct 72829 ACAGTGTACGGCCATCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGAG 72770 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| |||||| |||||| | ||| | ||| || || Sbjct 72769 GAATCCCCTCTTTGTCCTGAATTTTAGCTTTCACATTTTCAATTGTATCCGATGGCTCAA 72710 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| | ||||| || ||||| || | || || ||||| || ||||| Sbjct 72709 CTTCTAATGTAATAGTCTTGCCAGTGAGTGTCTTCACAAAGATCTGCAT 72661 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| || ||||| || ||||| || || |||||||| || |||||||| || | Sbjct 74122 CCTCCTCTCAATCTCAATACTAAATGCAGAGTGGATTCTTTCTGGATGTTGTAGTC--CG 74065 Query 20042 ATAGTTTTAGAA--TCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | ||| | | ||||||||||| ||||| ||| | ||||| | ||||| || || Sbjct 74064 ACAGTGTACGGCCGTCTTCCAATTGCTTGCCGGCAAAGATAAGACGTTGTTGGTCAGGGG 74005 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | || |||||||| |||||| ||||| | ||| || || || || Sbjct 74004 GAATCCCCTCTTTGTCTTGAATTTTGGCCTTCACATTTTCAATAGTGTCAGATGGCTCAA 73945 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 |||| || ||||| || ||||| | || || ||||| || ||||| Sbjct 73944 CCTCCAATGTGATGGTCTTTCCGGTGAGTGTCTTCACAAAGATCTGCAT 73896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419433906045537