Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq6 82.4 7e-11 >seq6 Length=1691400 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 ||||| || || || | | | ||||||||| ||||| | ||| ||||| || |||||| Sbjct 1115760 ATATATGTGTCAATGAGCAGGGAATACATTTCAGAATGGACATTCTCCATGGCAATTTGG 1115819 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTT-CGGAGTAAAATCTTTCTGCTAA 13539 ||||| || |||||||| || || | ||| || |||| | ||| | || | || ||| Sbjct 1115820 AAACCGTAGAAACATCTCGCTTCAGTTACTTGCACTTCCTGAG-AGAAGCGCTCAACTAG 1115878 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAA 13596 || || || || || ||||| |||||||| || || | || ||||| || || Sbjct 1115879 ATTCTCATTTACAATGCCGTCTGATGCAGCAAAGAAGGCCAATACATGCTTGATGAA 1115935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430824942869754