Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lerema_20accius_20[genbank_20GCA_5F001278395.1_202015-09-02] 29,977 sequences; 298,169,737 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq852 192 5e-44 seq397 93.3 4e-14 >seq852 Length=562639 Score = 192 bits (212), Expect = 5e-44 Identities = 693/1073 (65%), Gaps = 21/1073 (2%) Strand=Plus/Minus Query 30127 ATTGTTGTAGCCGACACGGACGGTTCCCACTTGGAACCCATCGAATACGTGTGGCGGGAC 30186 || || ||||| |||||||||||| |||||| |||| | || ||| | | || Sbjct 33871 ATCGTCGTAGCTGACACGGACGGTAGCCACTTACCACCCCTGGATTACACCATGGGAGAG 33812 Query 30187 AACAACAAACCATACACTAGAGCGACGGATCATGTGGTGGCCGGTTACTTTGTAGAGTGG 30246 || ||||| || | || | | | | | || || | | ||||| ||||| ||| Sbjct 33811 AAGAACAAGCCCTTCAAGCAAACATCTGGAAAAGTAGTCGGTGCCTACTTCGTAGAATGG 33752 Query 30247 GGTGTTTACGACAGACAATATCCAGCAGACTTAGTTCCCGTCCCCAACCTTACGCATCTT 30306 ||||| || | | | | || | ||| | |||| | || ||||| ||||||||| Sbjct 33751 GGTGTGTATCCCCGGAAGTTCCCTGTGGACAAAATTCCAATTCCAAACCTCACGCATCTT 33692 Query 30307 TTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGATAGCTTAAAGCAAGTG 30366 || || || || | || | || || |||||||| || ||||| || || ||| || | Sbjct 33691 TTATACGGGTTCATCCCAATTTGTGGGGGAGATGGCATCAACGACAGTTTGAAGGAAATC 33632 Query 30367 CCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAGAGGATTTTAAAGTGACG 30426 || || | ||||| ||| |||||| |||||||| || || || ||| | Sbjct 33631 GAAGGCAGTTTCCAAGCTTTGCAACGGTCTTGCAGCGGTCGAGAAGACTTCAAGGTGTCC 33572 Query 30427 ATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAGTGGGCGCTTGGGACGAT 30486 || |||||| |||| |||||| || ||||||||||| ||| | ||||| | || Sbjct 33571 ATCCACGATCCATGGGCCGCTCTCCAGAAACCACAAAAGGGATTATCATCTTGGAATGAA 33512 Query 30487 CCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAA--AAGACACAATCCCGACCTTA 30544 || || || || || || || ||||||||| | | || ||| || | || ||| | | Sbjct 33511 CCTTACAAGGGCAACTTCGGTCAACTGATGTCATTGAAGCAAGCCAGA--CCTGACTTAA 33454 Query 30545 CGATTTTACCGTCTATTGGCGGGTGGACACTTAGCGACCCTTTCTT-TAAATTGAGTTCT 30603 || | ||||||||||| || ||||| ||| || |||||||| | |||| | Sbjct 33453 AAATCCTGCCGTCTATTGGAGGTTGGACTCTTGCTGATCCTTTCTTCTTCTTTGA----T 33398 Query 30604 GCCGAA---AATCGCGCCGTTTTCGTTGAGTCCGCACGAGAGTATTTGCGCACATGGAAA 30660 | | || || | | | |||||| | || | || | || || |||||| Sbjct 33397 GACAAAGTGAAGAGGGACCGTTTCGTCAATTCAGTTAAGGAATTCCTGATGACGTGGAAA 33338 Query 30661 TTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGTAAAGGTGCTAATCCCGAA 30720 || ||||| || | || ||||| ||||| || || ||||| || || ||||| || | Sbjct 33337 TTCTTTGATGGTGTCGATATCGATTGGGAATTCCCTGGCGGCAAGGGCGCTAACCCTAAC 33278 Query 30721 TTAGGAGATCCAGAAAAGGATGGAGTAACATATGTGCAGTTATTGAAAGAGCTCAGAGAA 30780 | || | ||| |||||||| | ||| ||||||| ||| ||||||| || | || Sbjct 33277 CTCGGCGGTCC---TAAGGATGGCGAAACCTATGTGCTCTTAATGAAAGAACTTCGTGAG 33221 Query 30781 ATGCTAAACGATCTTTCTAAAGAAACAGGGAAAAAATACCAGCTCACCTCGGCGATTAGC 30840 ||||| ||||| | || | || || || || ||| |||| || || || || || Sbjct 33220 ATGCTCAACGAGTTATCATCTGCTACTGGCAAGAAGTACGAGCTAACTTCAGCTATCAGT 33161 Query 30841 GCGGGGTACGATAAAATCTCTA-TAGTTAATTATGAAAATGCGCA-AG-AGTATCTTGAT 30897 || || | || || || || | | || | || | ||||| || | || | || Sbjct 33160 GCTGGTTGGGACAAGAT-TCAAGTGGTCGACTA--CAGTCGCGCACAGAACTACATGGAC 33104 Query 30898 CACATTTTTGTTATGACGTACGATTTTAAAGGCGCTTGGTCTAACACGGACTTGGGATAT 30957 ||||| || | |||| ||||| || || || || ||||| ||| | | || | Sbjct 33103 CACATCTTCTTCATGAACTACGACTTCAAGGGAGCGTGGTCGAACGACACCCTAGGTCAC 33044 Query 30958 CACACTACACTTTATTCACCCTCTTGGAACGCTGAAGAAAAATATACTGCCGAGTACGCG 31017 || || | || || | || | ||||| || | |||| ||| || | || | || Sbjct 33043 CAGACATCTCTGTACGCTCCAGCCTGGAATCCTAAGGAAACATACACGACTGATTTCGGT 32984 Query 31018 ACAAAGGAGTTGTTAAAACAAAACGTCAATAGTAAGAAAATAGTGCTAGCTGTTGCAATG 31077 || | |||||| ||| |||||| ||||| | || | | |||||| ||| Sbjct 32983 GTTAAATACTTGTTAGCTCAAGGAGTCAATCCGAAGAAGGTCGTAGTTGGTGTTGCTATG 32924 Query 31078 TACGGAAGAGGGTGGACGGGTGTGCATGACATAAAAAACAACAATCCCTTTACGGGTGTA 31137 |||||| | || ||||| ||||| || | ||||| ||| |||||| || || Sbjct 32923 TACGGACGTGGATGGACTGGTGTTCACGGGTACGAAAACGACATTCCCTTCACAGGCAAT 32864 Query 31138 GCTCAGGGGCCGATTAAAGGAACTTGGGAAAGTGGAGTTGTAGATTACAAAGA 31190 ||| || || | ||||| || ||| || || || || ||||||| ||| Sbjct 32863 GCTTCTGGTCCTGTCAAAGGTACATGGCAAGACGGTGTGGTGGATTACAGAGA 32811 >seq397 Length=962699 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTC 48573 || || || || || ||| ||||||||| |||||||| || | || | || || | || Sbjct 56402 AAAACCAAGTGGAGAGTGGACTCCTTTTGGATGTTGTAGTCGGACAGAGTG-CGACCATC 56460 Query 48574 CTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTC 48633 ||||| || ||||| | |||| || | |||||| || || | | ||||||||| Sbjct 56461 TTCCAGTTGTTTACCCGCAAAAATCAATCTCTGCTGGTCTGGAGGAATGCCTTCCTTGTC 56520 Query 48634 CATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 | || || ||| | | | ||||| |||| || ||| ||| | |||||||| Sbjct 56521 CTGGATCTTGGCCTTCACATTTTCGATGGTGTCGGAAGGTTCCACCTCCAAGGTTATGGT 56580 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||| || ||||| ||||| |||||||| Sbjct 56581 TTTACCGGTCAGGGTTTTAACAAATATCTGCAT 56613 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| ||| ||| || || ||||| || |||| ||| || | || || Sbjct 57544 CACCAGATGAAGGGTGGACTCTTTCTGGATGTTATAGTCAGACAAAGTGCGACCATCTTC 57603 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||| || ||||| || | || | ||||||||| || || | | |||||||||| Sbjct 57604 CAGTTGTTTACCCGCGAAGATAAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTG 57663 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | ||||| || | || |||| ||| | || |||||||| Sbjct 57664 GATCTTGGCCTTCACATTTTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTTTT 57723 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||| || ||||| ||||| |||||||| Sbjct 57724 ACCGGTCAGGGTTTTAACAAAGATCTGCAT 57753 Score = 82.4 bits (90), Expect = 6e-11 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| || || | || || | ||||| || || |||||||| |||||||| | Sbjct 58439 CCTCCACGTAAACGCAAGACGAGGTGAAGAGTAGATTCTTTTTGAATATTGTAATCCGA- 58497 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || |||| || | ||||| || || |||| || ||||||||||| || Sbjct 58498 AAGAGTACGTCCGTCTTCTAATTGCTTGCCCGCGAAAATCAATCGCTGCTGATCAGGTGG 58557 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTG-ATAGACGCTATGGTATCGGTAGACTCCG 48677 | | ||||||||| |||||| ||||| | | | || ||||||| | ||| Sbjct 58558 TATGCCTTCCTTGTCTTGAATTTT-TGCTTTTACATTTTCAATTGTATCGGATGGCTCAA 58616 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 || | || || |||||||| || | ||||||||||||||| ||||| ||| Sbjct 58617 CTTCCAAGGTGATAGTTTTACCAGTTAAAGTTTTCACAAAAATTTGCATTGTG 58669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421097298111977